RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Anp32aO35381 247 aa21.48■■□□□ 1.03
Ccdc88b-201ENSMUST00000113440 Fmn1Q05860 1466 aa21.48■■□□□ 1.03
Ccdc88b-201ENSMUST00000113440 Erich6D3Z6S9 713 aa21.48■■□□□ 1.03
Ccdc88b-201ENSMUST00000113440 Aplp2Q06335 707 aa21.44■■□□□ 1.02
Ccdc88b-201ENSMUST00000113440 Rapgef2Q8CHG7 1496 aa21.26■□□□□ 0.99
Ccdc88b-201ENSMUST00000113440 Gm13697A2AK42 830 aa21.26■□□□□ 0.99
Ccdc88b-201ENSMUST00000113440 Arhgap27A2AB59 869 aa21.22■□□□□ 0.99
Ccdc88b-201ENSMUST00000113440 Prdm10Q3UTQ7 1184 aa21.21■□□□□ 0.99
Ccdc88b-201ENSMUST00000113440 Smarca4Q3TKT4 1613 aaKnown RBP21.2■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Atp1b4Q99ME6 356 aa21.2■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Atad2bE9Q166 1460 aaKnown RBP21.17■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Mrs2Q5NCE8 434 aa21.17■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Hdac5Q9Z2V6 1113 aa21.16■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 1700123L14RikQ3V2K7 440 aa21.16■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Calr4Q3TQS0 420 aa21.12■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Nlrp6Q91WS2 869 aa21.12■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Cttnbp2B9EJA2 1648 aa21.11■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Hspa5P20029 655 aaKnown RBP21.1■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Clstn2Q9ER65 966 aa21.09■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Rgl3Q3UYI5 709 aa21.08■□□□□ 0.96
Ccdc88b-201ENSMUST00000113440 Cux2P70298 1426 aa21.06■□□□□ 0.96
Ccdc88b-201ENSMUST00000113440 DaxxO35613 739 aa21.02■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Aebp1Q640N1 1128 aa21.01■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Baz1bQ9Z277 1479 aa21.01■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Mia2Q91ZV0 1396 aa20.99■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Ppp4r2Q0VGB7 417 aa20.98■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Phldb1Q6PDH0 1371 aaKnown RBP20.97■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Kif27Q7M6Z4 1394 aa20.95■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Mtus2Q3UHD3 1353 aa20.94■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Iqgap2Q3UQ44 1575 aa20.94■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Gm13695A2AK44 830 aa20.94■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Plppr3Q7TPB0 716 aa20.93■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Grwd1Q810D6 446 aaKnown RBP20.92■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Rad21Q61550 635 aaKnown RBP20.9■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Polr3glQ8R0C0 218 aa20.89■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Cc2d2aQ8CFW7 1633 aa20.88■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 P3h3Q8CG70 732 aa20.87■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Rpap1Q80TE0 1409 aa20.86■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 CntlnA2AM05 1397 aa20.86■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Sin3aQ60520 1274 aaKnown RBP20.85■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Rrp7aQ9D1C9 280 aaKnown RBP20.85■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Fyco1Q8VDC1 1437 aa20.84■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Wdr43Q6ZQL4 677 aaKnown RBP20.84■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 SafbD3YXK2 937 aaKnown RBP20.82■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Carmil1Q6EDY6 1374 aa20.81■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Arhgap35Q91YM2 1499 aa20.8■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Card11Q8CIS0 1159 aa20.78■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 LrpprcQ6PB66 1392 aaKnown RBP20.78■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Top2aQ01320 1528 aaKnown RBP20.77■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Cabp1Q9JLK7 227 aa20.76■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Pkd2O35245 966 aa20.76■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Kdm2aP59997 1161 aa20.76■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Fam71e1A1L3C1 212 aa20.74■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Mroh3A0A1D5RM54 893 aa20.73■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Ofd1Q80Z25 1017 aa20.73■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Wwc2Q6NXJ0 1187 aa20.72■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Mphosph9A6H5Y1 991 aa20.72■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 BicraF8VPZ9 1578 aa20.7■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Ccdc9Q8VC31 543 aaKnown RBP20.7■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Cwc22Q8C5N3 908 aaKnown RBP20.69■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Upf2A2AT37 1269 aaKnown RBP20.67■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 AknaQ80VW7 1404 aa20.67■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Dhx29Q6PGC1 1365 aaKnown RBP20.67■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Map4P27546 1125 aaKnown RBP20.63■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Rangap1P46061 589 aaKnown RBP20.63■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Ccnb3Q810T2 1396 aa20.63■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 ArxO35085 564 aa20.6■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Srpk2O54781 681 aaKnown RBP20.6■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Trak1Q6PD31 939 aa20.6■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Shroom4Q1W617 1475 aa20.59■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Gm20521D3Z5F7 333 aa20.58■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Rundc1Q0VDN7 615 aa20.58■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Stk24Q99KH8 431 aa20.57■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Safb2Q80YR5 991 aaKnown RBP20.56■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Top2bQ64511 1612 aa20.56■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Exoc6Q8R313 802 aa20.54■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Hsp90aa1P07901 733 aaKnown RBP20.53■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 PtprkP35822 1457 aa20.53■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Arap1Q4LDD4 1452 aa20.51■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 IqubQ8CDK3 788 aa20.5■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 Arid3cA6PWV5 409 aa20.49■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 Plekhh2Q8C115 1491 aa20.47■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 Naip1Q9QWK5 1403 aa20.46■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 Efcab5A0JP43 1406 aa20.45■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Ncapd3Q6ZQK0 1506 aa20.45■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Dhx57Q6P5D3 1388 aaKnown RBP20.45■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Trim26Q99PN3 545 aa20.45■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Frmpd1A2AKB4 1549 aa20.43■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 NrkQ9R0G8 1455 aa20.43■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 WrnO09053 1401 aa20.43■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Apbb1Q9QXJ1 710 aa20.42■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Ifit1bl1D3Z6F0 470 aa20.41■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Exosc9Q9JHI7 438 aaKnown RBP20.4■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 UacaQ8CGB3 1411 aa20.4■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Slc4a3P16283 1227 aa20.4■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Nup155Q99P88 1391 aaKnown RBP20.39■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Rad54l2Q99NG0 1466 aa20.39■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Neurod2Q62414 383 aa20.38■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Bcl11aQ9QYE3 773 aa20.38■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Usp47Q8BY87 1376 aa20.38■□□□□ 0.85
Retrieved 100 of 22,080 RNA–protein pairs in 14.6 ms