RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Rhox8Q6VSS7 320 aa28.02■■■□□ 2.08
Ccdc88b-201ENSMUST00000113440 NischQ80TM9 1593 aa26.36■■□□□ 1.81
Ccdc88b-201ENSMUST00000113440 Rpgrip1Q9EPQ2 1331 aa25.45■■□□□ 1.66
Ccdc88b-201ENSMUST00000113440 Ccdc136Q3TVA9 1136 aa25.3■■□□□ 1.64
Ccdc88b-201ENSMUST00000113440 Ehmt2Q9Z148 1263 aaKnown RBP25.26■■□□□ 1.63
Ccdc88b-201ENSMUST00000113440 Abcc9P70170 1546 aa24.92■■□□□ 1.58
Ccdc88b-201ENSMUST00000113440 Cngb1E1AZ71 1325 aa24.75■■□□□ 1.55
Ccdc88b-201ENSMUST00000113440 Esf1Q3V1V3 845 aaKnown RBP24.7■■□□□ 1.54
Ccdc88b-201ENSMUST00000113440 Trim41Q5NCC3 630 aa24.64■■□□□ 1.53
Ccdc88b-201ENSMUST00000113440 Gab3Q8BSM5 595 aa24.43■■□□□ 1.5
Ccdc88b-201ENSMUST00000113440 Abcc8B2RUS7 1588 aa24.4■■□□□ 1.5
Ccdc88b-201ENSMUST00000113440 Ccdc180J3QNE4 1664 aa24.31■■□□□ 1.48
Ccdc88b-201ENSMUST00000113440 Las1lA2BE28 776 aaKnown RBP24.24■■□□□ 1.47
Ccdc88b-201ENSMUST00000113440 Rtl1Q7M732 1744 aa24.16■■□□□ 1.46
Ccdc88b-201ENSMUST00000113440 Acin1Q9JIX8 1338 aaKnown RBP24.05■■□□□ 1.44
Ccdc88b-201ENSMUST00000113440 HrcG5E8J6 738 aa24.01■■□□□ 1.43
Ccdc88b-201ENSMUST00000113440 Npm2Q80W85 207 aa23.99■■□□□ 1.43
Ccdc88b-201ENSMUST00000113440 Zeb1Q64318 1117 aa23.93■■□□□ 1.42
Ccdc88b-201ENSMUST00000113440 Gm35339A0A140LHH9 1649 aa23.9■■□□□ 1.42
Ccdc88b-201ENSMUST00000113440 Myt1lP97500 1187 aa23.89■■□□□ 1.42
Ccdc88b-201ENSMUST00000113440 Zcchc6Q5BLK4 1491 aaKnown RBP23.88■■□□□ 1.41
Ccdc88b-201ENSMUST00000113440 Wdr66E9Q743 1299 aa23.75■■□□□ 1.39
Ccdc88b-201ENSMUST00000113440 Ube2uB1AUC4 352 aa23.51■■□□□ 1.35
Ccdc88b-201ENSMUST00000113440 UbtfP25976 765 aaKnown RBP23.48■■□□□ 1.35
Ccdc88b-201ENSMUST00000113440 Il27Q8K3I6 234 aa23.36■■□□□ 1.33
Ccdc88b-201ENSMUST00000113440 Pelp1Q9DBD5 1123 aaKnown RBP23.35■■□□□ 1.33
Ccdc88b-201ENSMUST00000113440 NefmP08553 848 aa23.34■■□□□ 1.33
Ccdc88b-201ENSMUST00000113440 Pcgf6Q99NA9 353 aa23.23■■□□□ 1.31
Ccdc88b-201ENSMUST00000113440 Rb1cc1Q9ESK9 1588 aa23.14■■□□□ 1.3
Ccdc88b-201ENSMUST00000113440 CenpbP27790 599 aa23.09■■□□□ 1.29
Ccdc88b-201ENSMUST00000113440 Dcaf1Q80TR8 1506 aa23.03■■□□□ 1.28
Ccdc88b-201ENSMUST00000113440 Supt5hO55201 1082 aaKnown RBP22.92■■□□□ 1.26
Ccdc88b-201ENSMUST00000113440 Ap3b1Q9Z1T1 1105 aa22.92■■□□□ 1.26
Ccdc88b-201ENSMUST00000113440 Chic1Q8CBW7 227 aa22.89■■□□□ 1.25
Ccdc88b-201ENSMUST00000113440 Mier1Q5UAK0 511 aa22.86■■□□□ 1.25
Ccdc88b-201ENSMUST00000113440 Brd4Q9ESU6 1400 aaKnown RBP22.8■■□□□ 1.24
Ccdc88b-201ENSMUST00000113440 NacadQ5SWP3 1504 aa22.77■■□□□ 1.24
Ccdc88b-201ENSMUST00000113440 Cep164Q5DU05 1446 aa22.76■■□□□ 1.23
Ccdc88b-201ENSMUST00000113440 Ppargc1bQ8VHJ7 1014 aa22.74■■□□□ 1.23
Ccdc88b-201ENSMUST00000113440 Baz1aO88379 1555 aa22.67■■□□□ 1.22
Ccdc88b-201ENSMUST00000113440 Fam50aQ9WV03 339 aaKnown RBP22.67■■□□□ 1.22
Ccdc88b-201ENSMUST00000113440 Myt1Q8CFC2 1127 aa22.67■■□□□ 1.22
Ccdc88b-201ENSMUST00000113440 Cdk11bP24788 784 aaKnown RBP22.58■■□□□ 1.2
Ccdc88b-201ENSMUST00000113440 Plekhg3Q4VAC9 1341 aa22.55■■□□□ 1.2
Ccdc88b-201ENSMUST00000113440 Npm1Q61937 292 aaKnown RBP22.53■■□□□ 1.2
Ccdc88b-201ENSMUST00000113440 Stra8P70278 393 aa22.53■■□□□ 1.2
Ccdc88b-201ENSMUST00000113440 Kdm5dQ62240 1548 aa22.52■■□□□ 1.2
Ccdc88b-201ENSMUST00000113440 TonslQ6NZL6 1363 aa22.48■■□□□ 1.19
Ccdc88b-201ENSMUST00000113440 Nop58Q6DFW4 536 aaKnown RBP22.46■■□□□ 1.19
Ccdc88b-201ENSMUST00000113440 Slc24a1Q91WD8 1130 aa22.44■■□□□ 1.18
Ccdc88b-201ENSMUST00000113440 NclP09405 707 aaKnown RBP22.35■■□□□ 1.17
Ccdc88b-201ENSMUST00000113440 Lmod2Q3UHZ5 550 aa22.35■■□□□ 1.17
Ccdc88b-201ENSMUST00000113440 Neurod1Q60867 357 aa22.31■■□□□ 1.16
Ccdc88b-201ENSMUST00000113440 Amer1Q7TS75 1132 aa22.29■■□□□ 1.16
Ccdc88b-201ENSMUST00000113440 Clip1Q922J3 1391 aa22.23■■□□□ 1.15
Ccdc88b-201ENSMUST00000113440 Sall2Q9QX96 1004 aa22.22■■□□□ 1.15
Ccdc88b-201ENSMUST00000113440 Golga3P55937 1487 aa22.21■■□□□ 1.15
Ccdc88b-201ENSMUST00000113440 Tnnt3Q9QZ47 272 aa22.2■■□□□ 1.14
Ccdc88b-201ENSMUST00000113440 Rsf1E9PWW9 1441 aaKnown RBP22.18■■□□□ 1.14
Ccdc88b-201ENSMUST00000113440 Eid3Q3V124 375 aa22.15■■□□□ 1.14
Ccdc88b-201ENSMUST00000113440 ClspnQ80YR7 1315 aa22.14■■□□□ 1.13
Ccdc88b-201ENSMUST00000113440 Ubl4bQ9CQ84 188 aa22.1■■□□□ 1.13
Ccdc88b-201ENSMUST00000113440 ScribQ80U72 1612 aa22.02■■□□□ 1.12
Ccdc88b-201ENSMUST00000113440 Mapk8ip2Q9ERE9 830 aa21.96■■□□□ 1.11
Ccdc88b-201ENSMUST00000113440 NrdcQ8BHG1 1161 aa21.95■■□□□ 1.1
Ccdc88b-201ENSMUST00000113440 Ccdc88bQ4QRL3 1481 aa21.93■■□□□ 1.1
Ccdc88b-201ENSMUST00000113440 Zbtb7cQ8VCZ7 619 aa21.91■■□□□ 1.1
Ccdc88b-201ENSMUST00000113440 Eif5bQ05D44 1216 aaKnown RBP21.86■■□□□ 1.09
Ccdc88b-201ENSMUST00000113440 Os9Q8K2C7 672 aa21.85■■□□□ 1.09
Ccdc88b-201ENSMUST00000113440 Sycp2Q9CUU3 1500 aa21.85■■□□□ 1.09
Ccdc88b-201ENSMUST00000113440 Kif15Q6P9L6 1387 aa21.83■■□□□ 1.09
Ccdc88b-201ENSMUST00000113440 Anp32bQ9EST5 272 aaKnown RBP21.82■■□□□ 1.08
Ccdc88b-201ENSMUST00000113440 Ttbk1Q6PCN3 1308 aa21.79■■□□□ 1.08
Ccdc88b-201ENSMUST00000113440 Rtl5Q5DTT4 599 aa21.79■■□□□ 1.08
Ccdc88b-201ENSMUST00000113440 Crybg2B7ZCC2 1516 aa21.76■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Aebp2Q9Z248 504 aaKnown RBP21.75■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Cecr2E9Q2Z1 1453 aa21.75■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Fkbp15Q6P9Q6 1216 aaKnown RBP21.74■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Setd5Q5XJV7 1441 aa21.74■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Ifnlr1Q8CGK5 535 aa21.74■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 BlmO88700 1416 aa21.73■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Smarca2Q6DIC0 1577 aa21.73■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Hnrnpul2Q00PI9 745 aaKnown RBP21.72■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Anks4bQ8K3X6 423 aa21.7■■□□□ 1.07
Ccdc88b-201ENSMUST00000113440 Ercc6F8VPZ5 1481 aa21.7■■□□□ 1.06
Ccdc88b-201ENSMUST00000113440 Csrnp3P59055 597 aa21.68■■□□□ 1.06
Ccdc88b-201ENSMUST00000113440 4933416C03RikQ3V063 378 aa21.66■■□□□ 1.06
Ccdc88b-201ENSMUST00000113440 Gm38655A0A286YDK6 273 aa21.64■■□□□ 1.05
Ccdc88b-201ENSMUST00000113440 DiexfQ8BTT6 772 aaKnown RBP21.62■■□□□ 1.05
Ccdc88b-201ENSMUST00000113440 Chic2Q9D9G3 165 aa21.61■■□□□ 1.05
Ccdc88b-201ENSMUST00000113440 CftrP26361 1476 aa21.58■■□□□ 1.05
Ccdc88b-201ENSMUST00000113440 Ccdc18Q640L5 1455 aa21.57■■□□□ 1.04
Ccdc88b-201ENSMUST00000113440 Ccer2J3QPU5 274 aa21.57■■□□□ 1.04
Ccdc88b-201ENSMUST00000113440 4930567H17RikQ3V0K5 233 aa21.56■■□□□ 1.04
Ccdc88b-201ENSMUST00000113440 Zbtb4Q5F293 982 aa21.55■■□□□ 1.04
Ccdc88b-201ENSMUST00000113440 NeflP08551 543 aa21.54■■□□□ 1.04
Ccdc88b-201ENSMUST00000113440 Eea1Q8BL66 1411 aa21.54■■□□□ 1.04
Ccdc88b-201ENSMUST00000113440 Pds5bQ4VA53 1446 aaKnown RBP21.52■■□□□ 1.04
Ccdc88b-201ENSMUST00000113440 Synj1Q8CHC4 1574 aa21.5■■□□□ 1.03
Ccdc88b-201ENSMUST00000113440 Cep162Q6ZQ06 1403 aa21.5■■□□□ 1.03
Retrieved 100 of 22,080 RNA–protein pairs in 8.5 ms