RNA–Protein interactions for RNA: snR48

snR48, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR48, Length 113 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR48snR48 NHX1Q04121 633 aa1.38□□□□□ -2.19
snR48snR48 VBA4Q04602 768 aaKnown RBP1.38□□□□□ -2.19
snR48snR48 YDL073WQ07454 984 aa1.38□□□□□ -2.19
snR48snR48 VHS3Q08438 674 aa1.38□□□□□ -2.19
snR48snR48 YPL216WQ08964 1102 aa1.38□□□□□ -2.19
snR48snR48 YFL068WP0CX99 160 aa1.37□□□□□ -2.19
snR48snR48 YLL066W-AP0CY00 160 aa1.37□□□□□ -2.19
snR48snR48 YLL067W-AP0CY01 160 aa1.37□□□□□ -2.19
snR48snR48 WHI2P12611 486 aa1.37□□□□□ -2.19
snR48snR48 LDB16P25587 256 aa1.37□□□□□ -2.19
snR48snR48 MNN4P36044 1178 aa1.37□□□□□ -2.19
snR48snR48 YFL015CP43578 164 aa1.37□□□□□ -2.19
snR48snR48 BI2P03873 423 aa1.36□□□□□ -2.19
snR48snR48 FRS1P15624 595 aaKnown RBP1.36□□□□□ -2.19
snR48snR48 RNR3P21672 869 aaKnown RBP1.36□□□□□ -2.19
snR48snR48 MIH1P23748 554 aa1.36□□□□□ -2.19
snR48snR48 CNE1P27825 502 aa1.36□□□□□ -2.19
snR48snR48 RPT3P33298 428 aaKnown RBP1.36□□□□□ -2.19
snR48snR48 YHR020WP38708 688 aaKnown RBP1.36□□□□□ -2.19
snR48snR48 TOM71P38825 639 aaKnown RBP1.36□□□□□ -2.19
snR48snR48 YIL092WP40497 633 aa1.36□□□□□ -2.19
snR48snR48 TDA10P42938 290 aa1.36□□□□□ -2.19
snR48snR48 GFD1Q04839 188 aaKnown RBP1.36□□□□□ -2.19
snR48snR48 YLR352WQ06479 807 aa1.36□□□□□ -2.19
snR48snR48 CDC9P04819 755 aa1.35□□□□□ -2.19
snR48snR48 SRD1P09007 221 aa1.35□□□□□ -2.19
snR48snR48 GAL11P19659 1081 aa1.35□□□□□ -2.19
snR48snR48 PET127P32606 800 aa1.35□□□□□ -2.19
snR48snR48 SCO2P38072 301 aa1.35□□□□□ -2.19
snR48snR48 SSZ1P38788 538 aaKnown RBP1.35□□□□□ -2.19
snR48snR48 CAF16P43569 289 aa1.35□□□□□ -2.19
snR48snR48 BUD17P53727 317 aa1.35□□□□□ -2.19
snR48snR48 VTC3Q02725 835 aa1.35□□□□□ -2.19
snR48snR48 WAR1Q03631 944 aa1.35□□□□□ -2.19
snR48snR48 EFR3Q03653 782 aaKnown RBP1.35□□□□□ -2.19
snR48snR48 PRP22P24384 1145 aaKnown RBP1.34□□□□□ -2.19
snR48snR48 HOG1P32485 435 aa1.34□□□□□ -2.19
snR48snR48 LOT5P34234 306 aa1.34□□□□□ -2.19
snR48snR48 YKR075CP36155 307 aa1.34□□□□□ -2.19
snR48snR48 DSS1P39112 969 aa1.34□□□□□ -2.19
snR48snR48 GDH3P39708 457 aa1.34□□□□□ -2.19
snR48snR48 YND1P40009 630 aa1.34□□□□□ -2.19
snR48snR48 SIM1P40472 476 aa1.34□□□□□ -2.19
snR48snR48 HUL5P53119 910 aa1.34□□□□□ -2.19
snR48snR48 BET4Q00618 327 aa1.34□□□□□ -2.19
snR48snR48 TIM50Q02776 476 aa1.34□□□□□ -2.19
snR48snR48 CEF1Q03654 590 aaPredicted RBP1.34□□□□□ -2.19
snR48snR48 TGS1Q12052 315 aa1.34□□□□□ -2.19
snR48snR48 IMG2P25642 146 aaPredicted RBP1.33□□□□□ -2.2
snR48snR48 RKM3P38222 552 aa1.33□□□□□ -2.2
snR48snR48 NUG1P40010 520 aaKnown RBP1.33□□□□□ -2.2
snR48snR48 RCR2Q03446 210 aaKnown RBP1.33□□□□□ -2.2
snR48snR48 YLR281CQ05863 155 aa1.33□□□□□ -2.2
snR48snR48 GSY1P23337 708 aa1.32□□□□□ -2.2
snR48snR48 SSD1P24276 1250 aaKnown RBP RIP-Chip data1.32□□□□□ -2.2not detected
snR48snR48 CPR3P25719 182 aa1.32□□□□□ -2.2
snR48snR48 YPT7P32939 208 aa1.32□□□□□ -2.2
snR48snR48 SWH1P35845 1188 aa1.32□□□□□ -2.2
snR48snR48 BRN1P38170 754 aa1.32□□□□□ -2.2
snR48snR48 YJR039WP47107 1121 aa1.32□□□□□ -2.2
snR48snR48 AIM14P53109 570 aa1.32□□□□□ -2.2
snR48snR48 YGR054WP53235 642 aaKnown RBP1.32□□□□□ -2.2
snR48snR48 SPO1P53541 631 aa1.32□□□□□ -2.2
snR48snR48 YMR210WQ03649 449 aa1.32□□□□□ -2.2
snR48snR48 PXA1P41909 870 aa1.31□□□□□ -2.2
snR48snR48 BFA1P47113 574 aa1.31□□□□□ -2.2
snR48snR48 TIP41Q12199 356 aa1.31□□□□□ -2.2
snR48snR48 AHA1Q12449 350 aaKnown RBP1.31□□□□□ -2.2
snR48snR48 CDC23P16522 626 aa1.3□□□□□ -2.2
snR48snR48 DHR2P36009 735 aaPredicted RBP1.3□□□□□ -2.2
snR48snR48 MNN1P39106 762 aa1.3□□□□□ -2.2
snR48snR48 YEL025CP39991 1188 aa1.3□□□□□ -2.2
snR48snR48 BUD8P41698 603 aa1.3□□□□□ -2.2
snR48snR48 SAP4P53036 818 aa1.3□□□□□ -2.2
snR48snR48 FDC1Q03034 503 aa1.3□□□□□ -2.2
snR48snR48 SNU56Q03782 492 aaKnown RBP1.3□□□□□ -2.2
snR48snR48 SND1Q04007 877 aa1.3□□□□□ -2.2
snR48snR48 HRD3Q05787 833 aa1.3□□□□□ -2.2
snR48snR48 DCS2Q12123 353 aa1.3□□□□□ -2.2
snR48snR48 YKU70P32807 602 aa1.29□□□□□ -2.2
snR48snR48 AVT5P38176 459 aa1.29□□□□□ -2.2
snR48snR48 CRG1P38892 291 aaRIP-Chip data1.29□□□□□ -2.2not detected
snR48snR48 ECM16Q04217 1267 aaKnown RBP1.29□□□□□ -2.2
snR48snR48 YLR407WQ06070 228 aa1.29□□□□□ -2.2
snR48snR48 YPS7Q06325 596 aa1.29□□□□□ -2.2
snR48snR48 PCL8Q08966 492 aa1.29□□□□□ -2.2
snR48snR48 CET1O13297 549 aaPredicted RBP1.28□□□□□ -2.2
snR48snR48 GAL4P04386 881 aa1.28□□□□□ -2.2
snR48snR48 ERR1P0CX10 437 aa1.28□□□□□ -2.2
snR48snR48 ERR2P0CX11 437 aa1.28□□□□□ -2.2
snR48snR48 RPL42AP0CX27 106 aaKnown RBP1.28□□□□□ -2.2
snR48snR48 RPL42BP0CX28 106 aaKnown RBP1.28□□□□□ -2.2
snR48snR48 HMG1P12683 1054 aa1.28□□□□□ -2.2
snR48snR48 CAP1P28495 268 aaKnown RBP1.28□□□□□ -2.2
snR48snR48 CCL1P37366 393 aa1.28□□□□□ -2.2
snR48snR48 FTR1P40088 404 aa1.28□□□□□ -2.2
snR48snR48 MAL11P53048 616 aa1.28□□□□□ -2.2
snR48snR48 CRZ1P53968 678 aa1.28□□□□□ -2.2
snR48snR48 RPS15Q01855 142 aaKnown RBP1.28□□□□□ -2.2
snR48snR48 DIG1Q03063 452 aaKnown RBP1.28□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 108.5 ms