RNA–Protein interactions for RNA: snR48

snR48, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR48, Length 113 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR48snR48 FAP1P53971 965 aa12.59□□□□□ -0.39
snR48snR48 MTC1P47018 478 aaKnown RBP12.13□□□□□ -0.47
snR48snR48 PRY3P47033 881 aa11.92□□□□□ -0.5
snR48snR48 YCK3P39962 524 aa11.32□□□□□ -0.6
snR48snR48 AAD16Q02895 342 aa11.26□□□□□ -0.61
snR48snR48 HAA1Q12753 694 aaKnown RBP11.19□□□□□ -0.62
snR48snR48 PRI1P10363 409 aa11.14□□□□□ -0.63
snR48snR48 ISW2Q08773 1120 aa10.38□□□□□ -0.75
snR48snR48 TSR3Q12094 313 aaKnown RBP10.36□□□□□ -0.75
snR48snR48 RPG1P38249 964 aaKnown RBP10.29□□□□□ -0.76
snR48snR48 YGL015CP33199 130 aa10.07□□□□□ -0.8
snR48snR48 MRPL32P25348 183 aa9.99□□□□□ -0.81
snR48snR48 BUD31P25337 157 aaPredicted RBP9.97□□□□□ -0.81
snR48snR48 DRS1P32892 752 aaKnown RBP9.66□□□□□ -0.86
snR48snR48 SIS1P25294 352 aaKnown RBP9.25□□□□□ -0.93
snR48snR48 RSE1Q04693 1361 aaKnown RBP9.24□□□□□ -0.93
snR48snR48 UBP10P53874 792 aaPredicted RBP9.23□□□□□ -0.93
snR48snR48 CDC27P38042 758 aa9.22□□□□□ -0.93
snR48snR48 MAP2P38174 421 aaKnown RBP9.11□□□□□ -0.95
snR48snR48 REB1P21538 810 aa9.1□□□□□ -0.95
snR48snR48 DIP2Q12220 943 aaPredicted RBP9.08□□□□□ -0.96
snR48snR48 UBP9P39967 754 aa9.03□□□□□ -0.96
snR48snR48 RPL17AP05740 184 aaKnown RBP9□□□□□ -0.97
snR48snR48 RPL17BP46990 184 aaKnown RBP9□□□□□ -0.97
snR48snR48 TGL3P40308 642 aa8.85□□□□□ -0.99
snR48snR48 YKR023WP36119 530 aaKnown RBP8.84□□□□□ -0.99
snR48snR48 TIF4632P39936 914 aaKnown RBP8.82□□□□□ -1
snR48snR48 TFC8Q12308 588 aa8.65□□□□□ -1.02
snR48snR48 SLX5P32828 619 aaKnown RBP8.64□□□□□ -1.03
snR48snR48 SCY1P53009 804 aa8.62□□□□□ -1.03
snR48snR48 SPT21P35209 758 aa8.6□□□□□ -1.03
snR48snR48 HOP09932 586 aa8.58□□□□□ -1.04
snR48snR48 DCD1P06773 312 aa8.57□□□□□ -1.04
snR48snR48 AVT3P36062 692 aa8.36□□□□□ -1.07
snR48snR48 MST1P07236 462 aa8.35□□□□□ -1.07
snR48snR48 YBL029C-AQ3E756 94 aa8.35□□□□□ -1.07
snR48snR48 BCH2P36122 765 aa8.3□□□□□ -1.08
snR48snR48 VNX1P42839 908 aa8.23□□□□□ -1.09
snR48snR48 AIR2Q12476 344 aaKnown RBP8.19□□□□□ -1.1
snR48snR48 YOR238WQ08634 303 aa8.15□□□□□ -1.1
snR48snR48 FKH1P40466 484 aa8.12□□□□□ -1.11
snR48snR48 YJL171CP46992 396 aa8.12□□□□□ -1.11
snR48snR48 SPP1Q03012 353 aa8.12□□□□□ -1.11
snR48snR48 NSR1P27476 414 aaKnown RBP RIP-Chip data8.07□□□□□ -1.12not detected
snR48snR48 BDF1P35817 686 aa7.98□□□□□ -1.13
snR48snR48 TIF11P38912 153 aaKnown RBP7.96□□□□□ -1.14
snR48snR48 EPS1P40557 701 aa7.96□□□□□ -1.14
snR48snR48 RIM101P33400 625 aa7.94□□□□□ -1.14
snR48snR48 WSC3Q12215 556 aa7.93□□□□□ -1.14
snR48snR48 BMT6Q12291 365 aa7.92□□□□□ -1.14
snR48snR48 YAP5P40574 245 aa7.88□□□□□ -1.15
snR48snR48 LDB19Q12502 818 aa7.82□□□□□ -1.16
snR48snR48 IOC2Q12072 812 aa7.79□□□□□ -1.16
snR48snR48 ULI1P43604 169 aa7.73□□□□□ -1.17
snR48snR48 GTT3P39996 337 aa7.69□□□□□ -1.18
snR48snR48 RGA2Q06407 1009 aa7.68□□□□□ -1.18
snR48snR48 OXP1P28273 1286 aa7.59□□□□□ -1.19
snR48snR48 MSB4Q12317 492 aa7.56□□□□□ -1.2
snR48snR48 RTG1P32607 177 aa7.54□□□□□ -1.2
snR48snR48 EAP1P36041 632 aaKnown RBP7.54□□□□□ -1.2
snR48snR48 BBC1P47068 1157 aa7.53□□□□□ -1.2
snR48snR48 NCR1Q12200 1170 aa7.53□□□□□ -1.2
snR48snR48 BCK2P33306 851 aa7.52□□□□□ -1.21
snR48snR48 SEC61P32915 480 aa7.47□□□□□ -1.21
snR48snR48 PTP3P40048 928 aa7.47□□□□□ -1.21
snR48snR48 YNL035CP53962 389 aaKnown RBP7.43□□□□□ -1.22
snR48snR48 TRP5P00931 707 aaKnown RBP7.42□□□□□ -1.22
snR48snR48 AI2P03876 854 aa7.42□□□□□ -1.22
snR48snR48 YIL055CP40523 627 aaKnown RBP7.42□□□□□ -1.22
snR48snR48 RSM7P47150 247 aa7.37□□□□□ -1.23
snR48snR48 CHL1P22516 861 aaPredicted RBP7.36□□□□□ -1.23
snR48snR48 PIB1Q06651 286 aa7.36□□□□□ -1.23
snR48snR48 YOL036WQ08206 761 aa7.36□□□□□ -1.23
snR48snR48 RGA1P39083 1007 aa7.33□□□□□ -1.24
snR48snR48 SET4P42948 560 aa7.32□□□□□ -1.24
snR48snR48 TFG1P41895 735 aaPredicted RBP7.29□□□□□ -1.24
snR48snR48 SAP30P38429 201 aa7.28□□□□□ -1.24
snR48snR48 PRE3P38624 215 aa7.28□□□□□ -1.24
snR48snR48 XDJ1P39102 459 aa7.27□□□□□ -1.25
snR48snR48 BFR2Q06631 534 aaKnown RBP7.26□□□□□ -1.25
snR48snR48 DAN4P47179 1161 aa7.23□□□□□ -1.25
snR48snR48 YDL129WQ07555 291 aa7.22□□□□□ -1.25
snR48snR48 JIP4Q03361 876 aa7.18□□□□□ -1.26
snR48snR48 SAM3Q08986 587 aa7.17□□□□□ -1.26
snR48snR48 DPS1P04802 557 aaKnown RBP7.15□□□□□ -1.26
snR48snR48 VRP1P37370 817 aa7.14□□□□□ -1.27
snR48snR48 VMA1P17255 1071 aaKnown RBP7.1□□□□□ -1.27
snR48snR48 PSD2P53037 1138 aaKnown RBP7.08□□□□□ -1.28
snR48snR48 SRC1Q03707 834 aa7.07□□□□□ -1.28
snR48snR48 YMR1P47147 688 aaKnown RBP RIP-Chip data7.06□□□□□ -1.28not detected
snR48snR48 ABP1P15891 592 aaKnown RBP7.05□□□□□ -1.28
snR48snR48 MRM1P25270 412 aa7.04□□□□□ -1.28
snR48snR48 YAH1Q12184 172 aaKnown RBP7.04□□□□□ -1.28
snR48snR48 DBP1P24784 617 aaKnown RBP7.03□□□□□ -1.28
snR48snR48 PTC4P38089 393 aa6.99□□□□□ -1.29
snR48snR48 VPS29P38759 282 aa6.98□□□□□ -1.29
snR48snR48 YDR344CQ05510 147 aa6.96□□□□□ -1.3
snR48snR48 YLR271WQ06152 274 aa6.96□□□□□ -1.3
snR48snR48 HTA1P04911 132 aaKnown RBP6.94□□□□□ -1.3
snR48snR48 HTA2P04912 132 aa6.94□□□□□ -1.3
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms