RNA–Protein interactions for RNA: YNL025C

SSN8, Transcript of Cyclin-like component of the RNA polymerase II holoenzyme, yeast

Gene SSN8, Length 972 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSN8	YNL025C	TAF11	Q04226	346 aa		3.37	□□□□□ -1.87
SSN8	YNL025C	EIS1	Q05050	843 aa	Known RBP	3.37	□□□□□ -1.87
SSN8	YNL025C	YDL073W	Q07454	984 aa		3.37	□□□□□ -1.87
SSN8	YNL025C	VHS3	Q08438	674 aa		3.37	□□□□□ -1.87
SSN8	YNL025C	MCH5	Q08777	521 aa		3.37	□□□□□ -1.87
SSN8	YNL025C	ACF2	Q12168	779 aa		3.37	□□□□□ -1.87
SSN8	YNL025C	DBP10	Q12389	995 aa	Known RBP	3.37	□□□□□ -1.87
SSN8	YNL025C	SEM1	O94742	89 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	ADE8	P04161	214 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	SEC18	P18759	758 aa	Known RBP	3.36	□□□□□ -1.87
SSN8	YNL025C	SLC1	P33333	303 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	STE13	P33894	931 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	MCD4	P36051	919 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	BYE1	P36106	594 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	TIF5	P38431	405 aa	Known RBP	3.36	□□□□□ -1.87
SSN8	YNL025C	UTP9	P38882	575 aa	Known RBP	3.36	□□□□□ -1.87
SSN8	YNL025C	SPT8	P38915	602 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.36	□□□□□ -1.87	not detected
SSN8	YNL025C	MAM1	P40065	302 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	VHR1	P40522	640 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	SMK1	P41808	388 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	SAE2	P46946	345 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	SET2	P46995	733 aa	Known RBP	3.36	□□□□□ -1.87
SSN8	YNL025C	NNF2	P53253	936 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	HST1	P53685	503 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	TEP1	P53916	434 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	NCS2	P53923	493 aa	Predicted RBP	3.36	□□□□□ -1.87
SSN8	YNL025C	ERG5	P54781	538 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	TMN2	Q04562	672 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	YPR196W	Q06595	470 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	3.36	□□□□□ -1.87	not detected
SSN8	YNL025C	APL4	Q12028	832 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	YOL114C	Q12322	202 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	ISA2	Q12425	185 aa		3.36	□□□□□ -1.87
SSN8	YNL025C	LEU2	P04173	364 aa	Predicted RBP	3.35	□□□□□ -1.87
SSN8	YNL025C	PPR1	P07272	904 aa	Predicted RBP	3.35	□□□□□ -1.87
SSN8	YNL025C	TOP3	P13099	656 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	3.35	□□□□□ -1.87	not detected
SSN8	YNL025C	HOP1	P20050	605 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	CAD1	P24813	409 aa	Known RBP	3.35	□□□□□ -1.87
SSN8	YNL025C	PAH1	P32567	862 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	HBS1	P32769	611 aa	Known RBP	3.35	□□□□□ -1.87
SSN8	YNL025C	ORC2	P32833	620 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	MDL1	P33310	695 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	PET10	P36139	283 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	HSL7	P38274	827 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	PCL7	P40186	285 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	CCT5	P40413	562 aa	Known RBP	3.35	□□□□□ -1.87
SSN8	YNL025C	UBP7	P40453	1071 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	ERR3	P42222	437 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	YGR153W	P48238	217 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	RNR4	P49723	345 aa	Known RBP	3.35	□□□□□ -1.87
SSN8	YNL025C	KEL2	P50090	882 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	DAM1	P53267	343 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	TIM11	P81449	96 aa	Predicted RBP	3.35	□□□□□ -1.87
SSN8	YNL025C	CIK1	Q01649	594 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	MRPL13	Q02204	264 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	SLU7	Q02775	382 aa	Known RBP	3.35	□□□□□ -1.87
SSN8	YNL025C	YKU80	Q04437	629 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	GAD1	Q04792	585 aa		3.35	□□□□□ -1.87
SSN8	YNL025C	NOT3	P06102	836 aa	Known RBP	3.34	□□□□□ -1.87
SSN8	YNL025C	PMS1	P14242	873 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	REC107	P21651	314 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	APN1	P22936	367 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	RAD51	P25454	400 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	NIP100	P33420	868 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	SDS22	P36047	338 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	MUD2	P36084	527 aa	Known RBP	3.34	□□□□□ -1.87
SSN8	YNL025C	MRPL36	P36531	177 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	CCL1	P37366	393 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	YBR284W	P38150	797 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	FTH1	P38310	465 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	PCM1	P38628	557 aa	Known RBP	3.34	□□□□□ -1.87
SSN8	YNL025C	RPN10	P38886	268 aa	Known RBP	3.34	□□□□□ -1.87
SSN8	YNL025C	UME6	P39001	836 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	SAW1	P39735	261 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	GDI1	P39958	451 aa	Known RBP	3.34	□□□□□ -1.87
SSN8	YNL025C	RTT105	P40063	208 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	KHA1	P40309	873 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	SDP1	P40479	209 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	ASK10	P48361	1146 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	UPF3	P48412	387 aa	Known RBP	3.34	□□□□□ -1.87
SSN8	YNL025C	SAP4	P53036	818 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	ZDS2	P54786	942 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	ARA2	Q04212	335 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	RAD33	Q04231	177 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	RNH1	Q04740	348 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	YSH1	Q06224	779 aa	Predicted RBP	3.34	□□□□□ -1.87
SSN8	YNL025C	YPR172W	Q06608	200 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	YDR306C	Q06640	478 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	HIM1	Q06674	414 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	SWA2	Q06677	668 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	MLH2	Q07980	695 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	IRC10	Q08118	586 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	YPR027C	Q12079	277 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	YPR071W	Q12346	211 aa		3.34	□□□□□ -1.87
SSN8	YNL025C	ALG7	P07286	448 aa		3.33	□□□□□ -1.88
SSN8	YNL025C	NUC1	P08466	329 aa		3.33	□□□□□ -1.88
SSN8	YNL025C	GFA1	P14742	717 aa	Known RBP	3.33	□□□□□ -1.88
SSN8	YNL025C	CKA1	P15790	372 aa		3.33	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms