RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C MEU1Q07938 337 aaKnown RBP RIP-Chip data2.28□□□□□ -2.04not detected
UFD4YKL010C ERP3Q12403 225 aa2.28□□□□□ -2.04
UFD4YKL010C RAD3P06839 778 aa2.28□□□□□ -2.04
UFD4YKL010C CIT2P08679 460 aa2.28□□□□□ -2.04
UFD4YKL010C EXO70P19658 623 aa2.28□□□□□ -2.04
UFD4YKL010C PRE10P21242 288 aaKnown RBP RIP-Chip data2.28□□□□□ -2.04not detected
UFD4YKL010C PEP7P32609 515 aa2.28□□□□□ -2.04
UFD4YKL010C RAD5P32849 1169 aaPredicted RBP2.28□□□□□ -2.04
UFD4YKL010C FTR1P40088 404 aa2.28□□□□□ -2.04
UFD4YKL010C IAH1P41734 238 aa2.28□□□□□ -2.04
UFD4YKL010C PGA2P53903 129 aa2.28□□□□□ -2.04
UFD4YKL010C DAK1P54838 584 aaKnown RBP2.28□□□□□ -2.04
UFD4YKL010C RPL34AP87262 121 aaPredicted RBP2.28□□□□□ -2.04
UFD4YKL010C ADA2Q02336 434 aa2.28□□□□□ -2.04
UFD4YKL010C YDR338CQ05497 695 aa2.28□□□□□ -2.04
UFD4YKL010C PSR2Q07949 397 aa2.28□□□□□ -2.04
UFD4YKL010C YPL225WQ08971 146 aaKnown RBP2.28□□□□□ -2.04
UFD4YKL010C PMA1P05030 918 aaKnown RBP2.28□□□□□ -2.05
UFD4YKL010C SRV2P17555 526 aaKnown RBP2.28□□□□□ -2.05
UFD4YKL010C TSR4P25040 408 aa2.28□□□□□ -2.05
UFD4YKL010C HSM3P38348 480 aa2.28□□□□□ -2.05
UFD4YKL010C SPC97P38863 823 aa2.28□□□□□ -2.05
UFD4YKL010C INP51P40559 946 aaKnown RBP2.28□□□□□ -2.05
UFD4YKL010C MRX6P48564 524 aa2.28□□□□□ -2.05
UFD4YKL010C NOP15P53927 220 aaPredicted RBP2.28□□□□□ -2.05
UFD4YKL010C AIM33Q04516 312 aa2.28□□□□□ -2.05
UFD4YKL010C ECM3Q99252 613 aa2.28□□□□□ -2.05
UFD4YKL010C TUF1P02992 437 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C RNA1P11745 407 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C CAF20P12962 161 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C GAL2P13181 574 aa2.27□□□□□ -2.05
UFD4YKL010C IME1P21190 360 aa2.27□□□□□ -2.05
UFD4YKL010C VMA4P22203 233 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C UBC6P33296 250 aaPredicted RBP2.27□□□□□ -2.05
UFD4YKL010C RPT1P33299 467 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C TFC3P34111 1160 aa2.27□□□□□ -2.05
UFD4YKL010C CSG2P35206 410 aa2.27□□□□□ -2.05
UFD4YKL010C CTP1P38152 299 aa2.27□□□□□ -2.05
UFD4YKL010C MSR1P38714 643 aa2.27□□□□□ -2.05
UFD4YKL010C DYS1P38791 387 aa2.27□□□□□ -2.05
UFD4YKL010C PRK1P40494 810 aa2.27□□□□□ -2.05
UFD4YKL010C PAN2P53010 1115 aaPredicted RBP2.27□□□□□ -2.05
UFD4YKL010C GGA1Q06336 557 aa2.27□□□□□ -2.05
UFD4YKL010C YLR001CQ07895 862 aa2.27□□□□□ -2.05
UFD4YKL010C MCH5Q08777 521 aa2.27□□□□□ -2.05
UFD4YKL010C GET4Q12125 312 aa2.27□□□□□ -2.05
UFD4YKL010C SEC39Q12745 709 aa2.27□□□□□ -2.05
UFD4YKL010C KAR3P17119 729 aa2.27□□□□□ -2.05
UFD4YKL010C GSY1P23337 708 aa2.27□□□□□ -2.05
UFD4YKL010C MCD4P36051 919 aa2.27□□□□□ -2.05
UFD4YKL010C TVP38P36164 337 aa2.27□□□□□ -2.05
UFD4YKL010C POL12P38121 705 aaPredicted RBP2.27□□□□□ -2.05
UFD4YKL010C YHR054CP38780 354 aa2.27□□□□□ -2.05
UFD4YKL010C NIT1P40447 199 aa2.27□□□□□ -2.05
UFD4YKL010C YFL066CP43538 392 aa2.27□□□□□ -2.05
UFD4YKL010C NET1P47035 1189 aa2.27□□□□□ -2.05
UFD4YKL010C URB2P47108 1174 aa2.27□□□□□ -2.05
UFD4YKL010C EAF6P47128 113 aa2.27□□□□□ -2.05
UFD4YKL010C CTR1P49573 406 aa2.27□□□□□ -2.05
UFD4YKL010C YGR125WP53273 1036 aa2.27□□□□□ -2.05
UFD4YKL010C JJJ1P53863 590 aa2.27□□□□□ -2.05
UFD4YKL010C SLG1P54867 378 aa2.27□□□□□ -2.05
UFD4YKL010C HMO1Q03973 246 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C SHE9Q04172 456 aa2.27□□□□□ -2.05
UFD4YKL010C YMR114CQ04471 368 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C YDR278CQ05612 105 aa2.27□□□□□ -2.05
UFD4YKL010C RUD3Q12234 484 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C ATP2P00830 511 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C PHO87P25360 923 aa2.27□□□□□ -2.05
UFD4YKL010C PMI40P29952 429 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C GCD6P32501 712 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C SMC1P32908 1225 aa2.27□□□□□ -2.05
UFD4YKL010C YKR018CP36114 725 aa2.27□□□□□ -2.05
UFD4YKL010C STV1P37296 890 aa2.27□□□□□ -2.05
UFD4YKL010C UBP13P38187 747 aa2.27□□□□□ -2.05
UFD4YKL010C RRT2P38332 387 aa2.27□□□□□ -2.05
UFD4YKL010C REV7P38927 245 aa2.27□□□□□ -2.05
UFD4YKL010C SAH1P39954 449 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C CCT8P47079 568 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C HLJ1P48353 224 aa2.27□□□□□ -2.05
UFD4YKL010C ASN1P49089 572 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C UBP15P50101 1230 aa2.27□□□□□ -2.05
UFD4YKL010C ARI1P53111 347 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C ZPR1P53303 486 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C VMS1Q04311 632 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C UFO1Q04511 668 aa2.27□□□□□ -2.05
UFD4YKL010C FAR8Q05040 523 aa2.27□□□□□ -2.05
UFD4YKL010C THI7Q05998 598 aa2.27□□□□□ -2.05
UFD4YKL010C SGT2Q12118 346 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C YOL098CQ12496 1037 aa2.27□□□□□ -2.05
UFD4YKL010C ILV1P00927 576 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C RAD1P06777 1100 aa2.27□□□□□ -2.05
UFD4YKL010C AMD2P22580 549 aa2.27□□□□□ -2.05
UFD4YKL010C RAD16P31244 790 aa2.27□□□□□ -2.05
UFD4YKL010C YBL028CP38202 106 aa2.27□□□□□ -2.05
UFD4YKL010C GUA1P38625 525 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C SIC1P38634 284 aa2.27□□□□□ -2.05
UFD4YKL010C RPL34BP40525 121 aaKnown RBP2.27□□□□□ -2.05
UFD4YKL010C INA22P40576 216 aa2.27□□□□□ -2.05
UFD4YKL010C YML037CQ03703 340 aa2.27□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 52.7 ms