RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W MRT4P33201 236 aaKnown RBP8.36□□□□□ -1.07
UFD1YGR048W APD1P38281 316 aa8.36□□□□□ -1.07
UFD1YGR048W SET5P38890 526 aaKnown RBP8.36□□□□□ -1.07
UFD1YGR048W SMC2P38989 1170 aaKnown RBP8.36□□□□□ -1.07
UFD1YGR048W MSB3P48566 633 aaPredicted RBP8.36□□□□□ -1.07
UFD1YGR048W DIP5P53388 608 aa8.36□□□□□ -1.07
UFD1YGR048W NAF1P53919 492 aaKnown RBP8.36□□□□□ -1.07
UFD1YGR048W CTF4Q01454 927 aa8.36□□□□□ -1.07
UFD1YGR048W EEB1Q02891 456 aa8.36□□□□□ -1.07
UFD1YGR048W ACL4Q03771 387 aa8.36□□□□□ -1.07
UFD1YGR048W GPI13Q07830 1017 aa8.36□□□□□ -1.07
UFD1YGR048W SGO1Q08490 590 aa8.36□□□□□ -1.07
UFD1YGR048W RKM4Q12504 494 aa8.36□□□□□ -1.07
UFD1YGR048W LEU1P07264 779 aaKnown RBP8.35□□□□□ -1.07
UFD1YGR048W PFK2P16862 959 aaKnown RBP RIP-Chip data8.35□□□□□ -1.07not detected
UFD1YGR048W OPI1P21957 404 aa8.35□□□□□ -1.07
UFD1YGR048W RET1P22276 1149 aaKnown RBP8.35□□□□□ -1.07
UFD1YGR048W PUF4P25339 888 aaKnown RBP RIP-Chip data8.35□□□□□ -1.07 RIP-Chip
UFD1YGR048W MET22P32179 357 aa8.35□□□□□ -1.07
UFD1YGR048W VMA8P32610 256 aaKnown RBP8.35□□□□□ -1.07
UFD1YGR048W HES1P35843 434 aa8.35□□□□□ -1.07
UFD1YGR048W YBR032WP38223 100 aa8.35□□□□□ -1.07
UFD1YGR048W SER3P40054 469 aa8.35□□□□□ -1.07
UFD1YGR048W AVT6P40074 448 aa8.35□□□□□ -1.07
UFD1YGR048W DIM1P41819 318 aaKnown RBP8.35□□□□□ -1.07
UFD1YGR048W IOC3P43596 787 aa8.35□□□□□ -1.07
UFD1YGR048W LSC2P53312 427 aa8.35□□□□□ -1.07
UFD1YGR048W IPI3P53877 555 aa8.35□□□□□ -1.07
UFD1YGR048W SLU7Q02775 382 aaKnown RBP8.35□□□□□ -1.07
UFD1YGR048W COX20Q04935 205 aa8.35□□□□□ -1.07
UFD1YGR048W NNT1Q05874 261 aa8.35□□□□□ -1.07
UFD1YGR048W YLR031WQ07978 186 aa8.35□□□□□ -1.07
UFD1YGR048W EMP46Q12396 444 aa8.35□□□□□ -1.07
UFD1YGR048W KIN2P13186 1147 aaKnown RBP8.34□□□□□ -1.07
UFD1YGR048W RPS5P26783 225 aaKnown RBP8.34□□□□□ -1.07
UFD1YGR048W SMI1P32566 505 aa8.34□□□□□ -1.07
UFD1YGR048W RPT5P33297 434 aaKnown RBP8.34□□□□□ -1.07
UFD1YGR048W YKL063CP35725 167 aa8.34□□□□□ -1.07
UFD1YGR048W PPS1P38148 807 aa8.34□□□□□ -1.07
UFD1YGR048W YBL036CP38197 257 aa8.34□□□□□ -1.07
UFD1YGR048W RPN10P38886 268 aaKnown RBP8.34□□□□□ -1.07
UFD1YGR048W IES5P40060 125 aa8.34□□□□□ -1.07
UFD1YGR048W SER33P40510 469 aa8.34□□□□□ -1.07
UFD1YGR048W KEL2P50090 882 aa8.34□□□□□ -1.07
UFD1YGR048W TAF6P53040 516 aa8.34□□□□□ -1.07
UFD1YGR048W PRP43P53131 767 aaKnown RBP8.34□□□□□ -1.07
UFD1YGR048W MPS2P53159 387 aa8.34□□□□□ -1.07
UFD1YGR048W YGR016WP53209 190 aa8.34□□□□□ -1.07
UFD1YGR048W DCP2P53550 970 aaKnown RBP8.34□□□□□ -1.07
UFD1YGR048W OSH6Q02201 448 aa8.34□□□□□ -1.07
UFD1YGR048W YDR239CQ03780 787 aa8.34□□□□□ -1.07
UFD1YGR048W ECM11Q04110 302 aa8.34□□□□□ -1.07
UFD1YGR048W DYN3Q04949 312 aa8.34□□□□□ -1.07
UFD1YGR048W ARP9Q05123 467 aa8.34□□□□□ -1.07
UFD1YGR048W RGC1Q06108 1083 aaKnown RBP8.34□□□□□ -1.07
UFD1YGR048W RSC2Q06488 889 aa8.34□□□□□ -1.07
UFD1YGR048W ARR2Q06597 130 aa8.34□□□□□ -1.07
UFD1YGR048W MCM21Q06675 368 aa8.34□□□□□ -1.07
UFD1YGR048W YEH2Q07950 538 aa8.34□□□□□ -1.07
UFD1YGR048W CDC53Q12018 815 aaKnown RBP8.34□□□□□ -1.07
UFD1YGR048W CWC2Q12046 339 aaPredicted RBP8.34□□□□□ -1.07
UFD1YGR048W SNU66Q12420 587 aaPredicted RBP8.34□□□□□ -1.07
UFD1YGR048W YPT6Q99260 215 aa8.34□□□□□ -1.07
UFD1YGR048W ATR1P13090 542 aa8.33□□□□□ -1.08
UFD1YGR048W HXT3P32466 567 aaKnown RBP8.33□□□□□ -1.08
UFD1YGR048W YHR112CP38716 378 aa8.33□□□□□ -1.08
UFD1YGR048W IML2P47031 731 aa8.33□□□□□ -1.08
UFD1YGR048W TRF5P48561 642 aaKnown RBP8.33□□□□□ -1.08
UFD1YGR048W GNP1P48813 663 aa8.33□□□□□ -1.08
UFD1YGR048W MIG2P53035 382 aa8.33□□□□□ -1.08
UFD1YGR048W YGL108CP53139 140 aa8.33□□□□□ -1.08
UFD1YGR048W CWC25P53854 179 aaKnown RBP8.33□□□□□ -1.08
UFD1YGR048W PGA2P53903 129 aa8.33□□□□□ -1.08
UFD1YGR048W REX2P54964 269 aaKnown RBP8.33□□□□□ -1.08
UFD1YGR048W SRF1Q12516 437 aa8.33□□□□□ -1.08
UFD1YGR048W RPL6BP05739 176 aaKnown RBP8.32□□□□□ -1.08
UFD1YGR048W STF2P16965 84 aa8.32□□□□□ -1.08
UFD1YGR048W RPB4P20433 221 aaPredicted RBP8.32□□□□□ -1.08
UFD1YGR048W GBP2P25555 427 aaKnown RBP RIP-Chip data8.32□□□□□ -1.08not detected
UFD1YGR048W ACH1P32316 526 aa8.32□□□□□ -1.08
UFD1YGR048W PLC1P32383 869 aa8.32□□□□□ -1.08
UFD1YGR048W HIR1P32479 840 aa8.32□□□□□ -1.08
UFD1YGR048W ARC19P33204 171 aaKnown RBP8.32□□□□□ -1.08
UFD1YGR048W BMH2P34730 273 aaKnown RBP8.32□□□□□ -1.08
UFD1YGR048W RPH1P39956 796 aa8.32□□□□□ -1.08
UFD1YGR048W PAC11P40960 533 aa8.32□□□□□ -1.08
UFD1YGR048W MET12P46151 657 aa8.32□□□□□ -1.08
UFD1YGR048W PTK2P47116 818 aaKnown RBP8.32□□□□□ -1.08
UFD1YGR048W PSP1P50896 841 aaKnown RBP8.32□□□□□ -1.08
UFD1YGR048W DRN1P53255 507 aaKnown RBP8.32□□□□□ -1.08
UFD1YGR048W CNM67P53865 581 aaKnown RBP8.32□□□□□ -1.08
UFD1YGR048W MEC3Q02574 474 aa8.32□□□□□ -1.08
UFD1YGR048W MDM36Q06820 579 aa8.32□□□□□ -1.08
UFD1YGR048W VHS3Q08438 674 aa8.32□□□□□ -1.08
UFD1YGR048W GET3Q12154 354 aaKnown RBP8.32□□□□□ -1.08
UFD1YGR048W RPS24AP0CX31 135 aaKnown RBP8.31□□□□□ -1.08
UFD1YGR048W RPS24BP0CX32 135 aaKnown RBP8.31□□□□□ -1.08
UFD1YGR048W HSP60P19882 572 aaKnown RBP8.31□□□□□ -1.08
UFD1YGR048W SLA1P32790 1244 aa8.31□□□□□ -1.08
UFD1YGR048W RPC25P35718 212 aa8.31□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms