RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W AIM39Q08223 395 aa14.81□□□□□ -0.04
DEP1YAL013W PKH2Q12236 1081 aaKnown RBP14.81□□□□□ -0.04
DEP1YAL013W CDC8P00572 216 aa14.8□□□□□ -0.04
DEP1YAL013W HAP2P06774 265 aa14.8□□□□□ -0.04
DEP1YAL013W PMS1P14242 873 aa14.8□□□□□ -0.04
DEP1YAL013W TRX1P22217 103 aaKnown RBP14.8□□□□□ -0.04
DEP1YAL013W AVT3P36062 692 aa14.8□□□□□ -0.04
DEP1YAL013W APM2P38700 605 aa14.8□□□□□ -0.04
DEP1YAL013W OPT1P40897 799 aa14.8□□□□□ -0.04
DEP1YAL013W MIC19P43594 170 aa14.8□□□□□ -0.04
DEP1YAL013W SKY1Q03656 742 aa14.8□□□□□ -0.04
DEP1YAL013W CIR2Q08822 631 aa14.8□□□□□ -0.04
DEP1YAL013W REC8Q12188 680 aa14.8□□□□□ -0.04
DEP1YAL013W EMP46Q12396 444 aa14.8□□□□□ -0.04
DEP1YAL013W RAD10P06838 210 aa14.79□□□□□ -0.04
DEP1YAL013W TUB3P09734 445 aaKnown RBP14.79□□□□□ -0.04
DEP1YAL013W PRP9P19736 530 aaKnown RBP14.79□□□□□ -0.04
DEP1YAL013W CAD1P24813 409 aaKnown RBP14.79□□□□□ -0.04
DEP1YAL013W NFU1P32860 256 aa14.79□□□□□ -0.04
DEP1YAL013W SWC5P38326 303 aa14.79□□□□□ -0.04
DEP1YAL013W YHR202WP38887 602 aa14.79□□□□□ -0.04
DEP1YAL013W SIP5P40210 489 aaKnown RBP14.79□□□□□ -0.04
DEP1YAL013W RPT2P40327 437 aaKnown RBP14.79□□□□□ -0.04
DEP1YAL013W NOG2P53742 486 aaKnown RBP14.79□□□□□ -0.04
DEP1YAL013W KAP95Q06142 861 aaKnown RBP14.79□□□□□ -0.04
DEP1YAL013W PIB1Q06651 286 aa14.79□□□□□ -0.04
DEP1YAL013W SDH5Q08230 162 aa14.79□□□□□ -0.04
DEP1YAL013W SEC1P30619 724 aaKnown RBP14.78□□□□□ -0.04
DEP1YAL013W LAS1P36146 502 aaPredicted RBP14.78□□□□□ -0.04
DEP1YAL013W YBR284WP38150 797 aa14.78□□□□□ -0.04
DEP1YAL013W SHE3P38272 425 aaKnown RBP14.78□□□□□ -0.04
DEP1YAL013W YEL023CP39992 682 aa14.78□□□□□ -0.04
DEP1YAL013W YNL320WP42840 284 aa14.78□□□□□ -0.04
DEP1YAL013W NMD5P46970 1048 aa14.78□□□□□ -0.04
DEP1YAL013W YNL011CP53980 444 aa14.78□□□□□ -0.04
DEP1YAL013W RPL22BP56628 122 aaKnown RBP14.78□□□□□ -0.04
DEP1YAL013W YPL062WQ02781 134 aa14.78□□□□□ -0.04
DEP1YAL013W MDM38Q08179 573 aa14.78□□□□□ -0.04
DEP1YAL013W APL5Q08951 932 aaKnown RBP14.78□□□□□ -0.04
DEP1YAL013W CIT2P08679 460 aa14.77□□□□□ -0.05
DEP1YAL013W GCD6P32501 712 aaKnown RBP14.77□□□□□ -0.05
DEP1YAL013W PEP7P32609 515 aa14.77□□□□□ -0.05
DEP1YAL013W PCA1P38360 1216 aa14.77□□□□□ -0.05
DEP1YAL013W YNL108CP53929 270 aa14.77□□□□□ -0.05
DEP1YAL013W SRB2P34162 210 aa14.76□□□□□ -0.05
DEP1YAL013W WHI3P34761 661 aaKnown RBP14.76□□□□□ -0.05
DEP1YAL013W MUD2P36084 527 aaKnown RBP14.76□□□□□ -0.05
DEP1YAL013W HMT1P38074 348 aa14.76□□□□□ -0.05
DEP1YAL013W XDJ1P39102 459 aa14.76□□□□□ -0.05
DEP1YAL013W ERP2P39704 215 aa14.76□□□□□ -0.05
DEP1YAL013W ARG2P40360 574 aa14.76□□□□□ -0.05
DEP1YAL013W TMA108P40462 946 aa14.76□□□□□ -0.05
DEP1YAL013W INP52P50942 1183 aa14.76□□□□□ -0.05
DEP1YAL013W SPP1Q03012 353 aa14.76□□□□□ -0.05
DEP1YAL013W MSD1P15179 658 aaKnown RBP14.75□□□□□ -0.05
DEP1YAL013W AEP2P22136 580 aa14.75□□□□□ -0.05
DEP1YAL013W PUF4P25339 888 aaKnown RBP RIP-Chip data14.75□□□□□ -0.05not detected
DEP1YAL013W UBC6P33296 250 aaPredicted RBP14.75□□□□□ -0.05
DEP1YAL013W CCL1P37366 393 aa14.75□□□□□ -0.05
DEP1YAL013W OLA1P38219 394 aaKnown RBP14.75□□□□□ -0.05
DEP1YAL013W MSG5P38590 489 aa14.75□□□□□ -0.05
DEP1YAL013W YJL045WP47052 634 aa14.75□□□□□ -0.05
DEP1YAL013W CDC55Q00362 526 aa14.75□□□□□ -0.05
DEP1YAL013W TAF9Q05027 157 aa14.75□□□□□ -0.05
DEP1YAL013W THI7Q05998 598 aa14.75□□□□□ -0.05
DEP1YAL013W YKL068W-AQ3E826 78 aa14.75□□□□□ -0.05
DEP1YAL013W VPS5Q92331 675 aa14.75□□□□□ -0.05
DEP1YAL013W LRE1P25579 583 aaKnown RBP14.74□□□□□ -0.05
DEP1YAL013W ADK2P26364 225 aa14.74□□□□□ -0.05
DEP1YAL013W TIF5P38431 405 aaKnown RBP14.74□□□□□ -0.05
DEP1YAL013W KHA1P40309 873 aa14.74□□□□□ -0.05
DEP1YAL013W YIL054WP40524 105 aa14.74□□□□□ -0.05
DEP1YAL013W PFD1P46988 109 aa14.74□□□□□ -0.05
DEP1YAL013W UTP6Q02354 440 aaKnown RBP14.74□□□□□ -0.05
DEP1YAL013W GPM2Q12008 311 aa14.74□□□□□ -0.05
DEP1YAL013W YRR1Q12172 810 aa14.74□□□□□ -0.05
DEP1YAL013W YDR018CQ12185 396 aa14.74□□□□□ -0.05
DEP1YAL013W YPK1P12688 680 aaKnown RBP14.73□□□□□ -0.05
DEP1YAL013W PEP5P12868 1029 aa14.73□□□□□ -0.05
DEP1YAL013W TKL2P33315 681 aa14.73□□□□□ -0.05
DEP1YAL013W RAD55P38953 406 aa14.73□□□□□ -0.05
DEP1YAL013W YMR134WP40207 237 aa14.73□□□□□ -0.05
DEP1YAL013W MVP1P40959 511 aaKnown RBP14.73□□□□□ -0.05
DEP1YAL013W TCB2P48231 1178 aa14.73□□□□□ -0.05
DEP1YAL013W RCL1Q08096 367 aaPredicted RBP14.73□□□□□ -0.05
DEP1YAL013W APC5Q08683 685 aa14.73□□□□□ -0.05
DEP1YAL013W LYS9P38999 446 aa14.72□□□□□ -0.05
DEP1YAL013W YNL247WP53852 767 aaKnown RBP14.72□□□□□ -0.05
DEP1YAL013W YNL040WP53960 456 aaPredicted RBP14.72□□□□□ -0.05
DEP1YAL013W APM4Q99186 491 aa14.72□□□□□ -0.05
DEP1YAL013W YML002WP0CF17 737 aa14.71□□□□□ -0.05
DEP1YAL013W RFS1P38234 210 aaKnown RBP14.71□□□□□ -0.05
DEP1YAL013W ECM2P38241 364 aaKnown RBP14.71□□□□□ -0.05
DEP1YAL013W SPP381P38282 291 aaPredicted RBP14.71□□□□□ -0.05
DEP1YAL013W YFL052WP43551 465 aa14.71□□□□□ -0.05
DEP1YAL013W YML6P51998 286 aa14.71□□□□□ -0.05
DEP1YAL013W ELP3Q02908 557 aaKnown RBP14.71□□□□□ -0.05
DEP1YAL013W PBP2P38151 413 aaKnown RBP RIP-Chip data14.7□□□□□ -0.06not detected
DEP1YAL013W APN2P38207 520 aa14.7□□□□□ -0.06
DEP1YAL013W PRK1P40494 810 aa14.7□□□□□ -0.06
Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms