Protein–RNA interactions for Protein: P38272

SHE3, SWI5-dependent HO expression protein 3, yeastyeast

Known RBP Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHE3P38272 YML009W-BYML009W-B 477 nt21.74■■□□□ 1.07
SHE3P38272 NSR1YGR159C 1245 nt21.48■■□□□ 1.03
SHE3P38272 NOP1YDL014W 984 nt21.28■■□□□ 1
SHE3P38272 YKL036CYKL036C 393 nt19.75■□□□□ 0.75
SHE3P38272 MDJ1YFL016C 1536 nt18.82■□□□□ 0.6
SHE3P38272 Q0297Q0297 156 nt18.62■□□□□ 0.57
SHE3P38272 SRX1YKL086W 384 nt18.54■□□□□ 0.56
SHE3P38272 YJL027CYJL027C 417 nt18.47■□□□□ 0.55
SHE3P38272 SCS3YGL126W 1143 nt18.01■□□□□ 0.47
SHE3P38272 YCR051WYCR051W 669 nt17.61■□□□□ 0.41
SHE3P38272 YOL085CYOL085C 342 nt17.06■□□□□ 0.32
SHE3P38272 PKP1YIL042C 1185 nt16.75■□□□□ 0.27
SHE3P38272 RPP1BYDL130W 321 nt16.72■□□□□ 0.27
SHE3P38272 DBP2YNL112W 1641 nt16.7■□□□□ 0.26
SHE3P38272 TRN1tP(UGG)A 72 nt16.63■□□□□ 0.25
SHE3P38272 SUF9tP(UGG)F 72 nt16.63■□□□□ 0.25
SHE3P38272 SUF8tP(UGG)H 72 nt16.63■□□□□ 0.25
SHE3P38272 tP(UGG)LtP(UGG)L 72 nt16.63■□□□□ 0.25
SHE3P38272 SUF7tP(UGG)M 72 nt16.63■□□□□ 0.25
SHE3P38272 tP(UGG)N1tP(UGG)N1 72 nt16.63■□□□□ 0.25
SHE3P38272 tP(UGG)N2tP(UGG)N2 72 nt16.63■□□□□ 0.25
SHE3P38272 tP(UGG)O1tP(UGG)O1 72 nt16.63■□□□□ 0.25
SHE3P38272 SUF11tP(UGG)O2 72 nt16.63■□□□□ 0.25
SHE3P38272 CCC1YLR220W 969 nt16.47■□□□□ 0.23
SHE3P38272 SCJ1YMR214W 1134 nt16.25■□□□□ 0.19
SHE3P38272 ATS1YAL020C 1002 nt16.17■□□□□ 0.18
SHE3P38272 YBR190WYBR190W 312 nt16.07■□□□□ 0.16
SHE3P38272 PET122YER153C 765 nt15.9■□□□□ 0.14
SHE3P38272 RVS167YDR388W 1449 nt15.89■□□□□ 0.13
SHE3P38272 SCR1SCR1 522 nt15.89■□□□□ 0.13
SHE3P38272 tP(UGG)O3tP(UGG)O3 72 nt15.79■□□□□ 0.12
SHE3P38272 RTC3YHR087W 336 nt15.74■□□□□ 0.11
SHE3P38272 RRN5YLR141W 1092 nt15.47■□□□□ 0.07
SHE3P38272 SHR5YOL110W 714 nt15.33■□□□□ 0.04
SHE3P38272 YDJ1YNL064C 1230 nt15.31■□□□□ 0.04
SHE3P38272 RSB1YOR049C 1065 nt15.24■□□□□ 0.03
SHE3P38272 YER088W-BYER088W-B 147 nt15.16■□□□□ 0.02
SHE3P38272 PST2YDR032C 597 nt14.93□□□□□ -0.02
SHE3P38272 GAR1YHR089C 618 nt14.91□□□□□ -0.02
SHE3P38272 DEP1YAL013W 1218 nt14.78□□□□□ -0.04
SHE3P38272 URN1YPR152C 1398 nt14.77□□□□□ -0.04
SHE3P38272 RPN10YHR200W 807 nt14.68□□□□□ -0.06
SHE3P38272 YNL208WYNL208W 600 nt14.63□□□□□ -0.07
SHE3P38272 OPI9YLR338W 858 nt14.53□□□□□ -0.08
SHE3P38272 YKL097CYKL097C 411 nt14.48□□□□□ -0.09
SHE3P38272 TIR1YER011W 765 nt14.42□□□□□ -0.1
SHE3P38272 PUT4YOR348C 1884 nt14.38□□□□□ -0.11
SHE3P38272 SAH1YER043C 1350 nt14.35□□□□□ -0.11
SHE3P38272 SHU1YHL006C 453 nt14.27□□□□□ -0.13
SHE3P38272 ARE1YCR048W 1833 nt14.18□□□□□ -0.14
SHE3P38272 SSA1YAL005C 1929 nt14.15□□□□□ -0.14
SHE3P38272 PUN1YLR414C 792 nt14.15□□□□□ -0.14
SHE3P38272 YJR018WYJR018W 363 nt14.12□□□□□ -0.15
SHE3P38272 YHR049C-AYHR049C-A 297 nt14.03□□□□□ -0.16
SHE3P38272 YAL037C-BYAL037C-B 975 nt13.97□□□□□ -0.17
SHE3P38272 POA1YBR022W 534 nt13.97□□□□□ -0.17
SHE3P38272 RPP2BYDR382W 333 nt13.94□□□□□ -0.18
SHE3P38272 PTC2YER089C 1395 nt13.89□□□□□ -0.19
SHE3P38272 SRB2YHR041C 633 nt13.86□□□□□ -0.19
SHE3P38272 YGR021WYGR021W 873 nt13.84□□□□□ -0.19
SHE3P38272 YJR120WYJR120W 351 nt13.83□□□□□ -0.2
SHE3P38272 YOR139CYOR139C 393 nt13.79□□□□□ -0.2
SHE3P38272 WWM1YFL010C 636 nt13.78□□□□□ -0.2
SHE3P38272 BUD23YCR047C 828 nt13.74□□□□□ -0.21
SHE3P38272 NPL3YDR432W 1245 nt13.73□□□□□ -0.21
SHE3P38272 HOM6YJR139C 1080 nt13.72□□□□□ -0.21
SHE3P38272 NAB2YGL122C 1578 nt13.71□□□□□ -0.21
SHE3P38272 MNP1YGL068W 585 nt13.65□□□□□ -0.22
SHE3P38272 BDH2YAL061W 1254 nt13.64□□□□□ -0.23
SHE3P38272 INM2YDR287W 879 nt13.63□□□□□ -0.23
SHE3P38272 BSC6YOL137W 1494 nt13.62□□□□□ -0.23
SHE3P38272 YFL021C-AYFL021C-A 855 nt13.61□□□□□ -0.23
SHE3P38272 YOL037CYOL037C 354 nt13.59□□□□□ -0.23
SHE3P38272 DAL1YIR027C 1383 nt13.57□□□□□ -0.24
SHE3P38272 RKM5YLR137W 1104 nt13.53□□□□□ -0.24
SHE3P38272 FPR4YLR449W 1179 nt13.53□□□□□ -0.24
SHE3P38272 LSM3YLR438C-A 270 nt13.52□□□□□ -0.25
SHE3P38272 YBL100CYBL100C 315 nt13.49□□□□□ -0.25
SHE3P38272 FIS1YIL065C 468 nt13.47□□□□□ -0.25
SHE3P38272 SSA3YBL075C 1950 nt13.45□□□□□ -0.26
SHE3P38272 PHO4YFR034C 939 nt13.41□□□□□ -0.26
SHE3P38272 TRM9YML014W 840 nt13.39□□□□□ -0.27
SHE3P38272 FUN26YAL022C 1554 nt13.32□□□□□ -0.28
SHE3P38272 tM(CAU)CtM(CAU)C 72 nt13.26□□□□□ -0.29
SHE3P38272 IMT4tM(CAU)E 72 nt13.26□□□□□ -0.29
SHE3P38272 IMT3tM(CAU)J3 72 nt13.26□□□□□ -0.29
SHE3P38272 IMT1tM(CAU)O1 72 nt13.26□□□□□ -0.29
SHE3P38272 IMT2tM(CAU)P 72 nt13.26□□□□□ -0.29
SHE3P38272 YLR281CYLR281C 468 nt13.21□□□□□ -0.29
SHE3P38272 CCT6YDR188W 1641 nt13.2□□□□□ -0.3
SHE3P38272 SUF2tP(AGG)C 72 nt13.15□□□□□ -0.3
SHE3P38272 SUF10tP(AGG)N 72 nt13.15□□□□□ -0.3
SHE3P38272 ALF1YNL148C 765 nt13.15□□□□□ -0.3
SHE3P38272 PUS2YGL063W 1113 nt13.14□□□□□ -0.31
SHE3P38272 WHI5YOR083W 888 nt13.14□□□□□ -0.31
SHE3P38272 YPS1YLR120C 1710 nt13.08□□□□□ -0.32
SHE3P38272 YDR095CYDR095C 411 nt13.03□□□□□ -0.32
SHE3P38272 YLR154C-GYLR154C-G 150 nt13.01□□□□□ -0.33
SHE3P38272 YHR165W-AYHR165W-A 312 nt12.96□□□□□ -0.33
SHE3P38272 IMP2'YIL154C 1041 nt12.95□□□□□ -0.34
Retrieved 100 of 7,029 protein–RNA pairs in 12.9 ms