RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	ORC2	P32833	620 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	GIP1	P38229	639 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	SEC27	P41811	889 aa	Known RBP	4.14	□□□□□ -1.75
NUP85	YJR042W	CCT8	P47079	568 aa	Known RBP	4.14	□□□□□ -1.75
NUP85	YJR042W	PEX15	Q08215	383 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	CUE5	Q08412	411 aa	Known RBP	4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-GR1	Q12085	440 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-OL	Q92392	440 aa	Known RBP	4.14	□□□□□ -1.75
NUP85	YJR042W	CPA2	P03965	1118 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	GLK1	P17709	500 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	RET1	P22276	1149 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	CMK1	P27466	446 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	CCR4	P31384	837 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	DOM34	P33309	386 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	MTH1	P35198	433 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	LAM1	P38851	1228 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	NPR2	P39923	615 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	YEL068C	P39977	110 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	FIR1	P40020	876 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	GCD10	P41814	478 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	RNR4	P49723	345 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	YGR283C	P53336	341 aa	Predicted RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	FRK1	Q03002	865 aa	Predicted RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	ISA1	Q07821	250 aa	Predicted RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	HVG1	P0CE11	249 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	DAT1	P13483	248 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	DBP5	P20449	482 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	SYP1	P25623	870 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	UGA3	P26370	528 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	MLS1	P30952	554 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	SLA1	P32790	1244 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	SQT1	P35184	431 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	POP2	P39008	433 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	YIL166C	P40445	542 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	YIL165C	P40446	119 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	HXT16	P47185	567 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	PUS4	P48567	403 aa	Known RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	SKY1	Q03656	742 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	SYF1	Q04048	859 aa	Predicted RBP	4.13	□□□□□ -1.75
NUP85	YJR042W	BLS1	Q06071	122 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	PMT7	Q06644	662 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	OMS1	Q06668	471 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	ESC8	Q08119	714 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	LAP2	Q10740	671 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	HFI1	Q12060	488 aa		4.13	□□□□□ -1.75
NUP85	YJR042W	SNF2	P22082	1703 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	TUF1	P02992	437 aa	Known RBP	4.12	□□□□□ -1.75
NUP85	YJR042W	MTF2	P10849	440 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	SPE2	P21182	396 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	DAL1	P32375	460 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	HOG1	P32485	435 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	YKU70	P32807	602 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	AIM46	P38885	310 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	YPL071C	Q02864	156 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	JIP4	Q03361	876 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	PRP42	Q03776	544 aa	Known RBP	4.12	□□□□□ -1.75
NUP85	YJR042W	GSF2	Q04697	403 aa	Known RBP	4.12	□□□□□ -1.75
NUP85	YJR042W	HAL9	Q12180	1030 aa		4.12	□□□□□ -1.75
NUP85	YJR042W	SEM1	O94742	89 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	PHO81	P17442	1178 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	DBP2	P24783	546 aa	Known RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	TFB1	P32776	642 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	YKL100C	P34248	587 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	IFA38	P38286	347 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	YBR225W	P38321	900 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	TOK1	P40310	691 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	ALF1	P53904	254 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	TEP1	P53916	434 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	VID22	Q05934	901 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	VHS3	Q08438	674 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	REX3	Q12090	404 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	SMC6	Q12749	1114 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	APM4	Q99186	491 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	BCK1	Q01389	1478 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	HAP1	P0CE41	1502 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	LEU1	P07264	779 aa	Known RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	CDC16	P09798	840 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	OLE1	P21147	510 aa	Known RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	REC107	P21651	314 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	CHL1	P22516	861 aa	Predicted RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	ADP1	P25371	1049 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	KAP122	P32767	1081 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	OAF3	P36023	863 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	VRP1	P37370	817 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	CCZ1	P38273	704 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	SSN3	P39073	555 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	KAP123	P40069	1113 aa	Known RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	JEM1	P40358	645 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	SKP2	P42843	763 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	YGR153W	P48238	217 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	ELA1	P53861	379 aa	Predicted RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	ATP25	Q03153	612 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	YMR018W	Q04364	514 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	SPP382	Q06411	708 aa	Predicted RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	YDR306C	Q06640	478 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	RIX7	Q07844	837 aa	Known RBP	4.11	□□□□□ -1.75
NUP85	YJR042W	GUP2	Q08929	609 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	TAH18	Q12181	623 aa		4.11	□□□□□ -1.75
NUP85	YJR042W	ARP7	Q12406	477 aa		4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 57 ms