RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIM1	YIL123W	SWI3	P32591	825 aa		12.03	□□□□□ -0.48
SIM1	YIL123W	TIM23	P32897	222 aa		12.03	□□□□□ -0.48
SIM1	YIL123W	MXR1	P40029	184 aa		12.03	□□□□□ -0.48
SIM1	YIL123W	CLA4	P48562	842 aa		12.03	□□□□□ -0.48
SIM1	YIL123W	ASN1	P49089	572 aa	Known RBP	12.03	□□□□□ -0.48
SIM1	YIL123W	ECM7	Q06200	448 aa		12.03	□□□□□ -0.48
SIM1	YIL123W	YDR461C-A	Q2V2P7	80 aa		12.03	□□□□□ -0.48
SIM1	YIL123W	CDC8	P00572	216 aa		12.02	□□□□□ -0.49
SIM1	YIL123W	NAT1	P12945	854 aa	Known RBP	12.02	□□□□□ -0.49
SIM1	YIL123W	MUD2	P36084	527 aa	Known RBP	12.02	□□□□□ -0.49
SIM1	YIL123W	FTR1	P40088	404 aa		12.02	□□□□□ -0.49
SIM1	YIL123W	MVP1	P40959	511 aa	Known RBP	12.02	□□□□□ -0.49
SIM1	YIL123W	CPR7	P47103	393 aa		12.02	□□□□□ -0.49
SIM1	YIL123W	PSP2	P50109	593 aa	Known RBP	12.02	□□□□□ -0.49
SIM1	YIL123W	JJJ1	P53863	590 aa		12.02	□□□□□ -0.49
SIM1	YIL123W	YDR090C	Q03193	310 aa		12.02	□□□□□ -0.49
SIM1	YIL123W	PPM1	Q04081	328 aa		12.02	□□□□□ -0.49
SIM1	YIL123W	IWR1	Q07532	353 aa	Predicted RBP	12.02	□□□□□ -0.49
SIM1	YIL123W	GIS3	Q12418	502 aa		12.02	□□□□□ -0.49
SIM1	YIL123W	SPT2	P06843	333 aa	Predicted RBP	12.01	□□□□□ -0.49
SIM1	YIL123W	MOT2	P34909	587 aa	Known RBP	12.01	□□□□□ -0.49
SIM1	YIL123W	GUA1	P38625	525 aa	Known RBP	12.01	□□□□□ -0.49
SIM1	YIL123W	RSC30	P38781	883 aa		12.01	□□□□□ -0.49
SIM1	YIL123W	SCS3	P53012	380 aa		12.01	□□□□□ -0.49
SIM1	YIL123W	URH1	Q04179	340 aa		12.01	□□□□□ -0.49
SIM1	YIL123W	ECI1	Q05871	280 aa		12.01	□□□□□ -0.49
SIM1	YIL123W	RGA2	Q06407	1009 aa		12.01	□□□□□ -0.49
SIM1	YIL123W	HIF1	Q12373	385 aa		12.01	□□□□□ -0.49
SIM1	YIL123W	ZRT2	Q12436	422 aa		12.01	□□□□□ -0.49
SIM1	YIL123W	CDC42	P19073	191 aa		12	□□□□□ -0.49
SIM1	YIL123W	CSG2	P35206	410 aa		12	□□□□□ -0.49
SIM1	YIL123W	SPC72	P39723	622 aa		12	□□□□□ -0.49
SIM1	YIL123W	YTA12	P40341	825 aa		12	□□□□□ -0.49
SIM1	YIL123W	MIC19	P43594	170 aa		12	□□□□□ -0.49
SIM1	YIL123W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	12	□□□□□ -0.49	not detected
SIM1	YIL123W	TBF1	Q02457	562 aa		12	□□□□□ -0.49
SIM1	YIL123W	HFI1	Q12060	488 aa		12	□□□□□ -0.49
SIM1	YIL123W	IME1	P21190	360 aa		11.99	□□□□□ -0.49
SIM1	YIL123W	SCJ1	P25303	377 aa		11.99	□□□□□ -0.49
SIM1	YIL123W	MRX3	P38172	270 aa		11.99	□□□□□ -0.49
SIM1	YIL123W	RPC17	P47076	161 aa		11.99	□□□□□ -0.49
SIM1	YIL123W	JJJ3	P47138	172 aa		11.99	□□□□□ -0.49
SIM1	YIL123W	EEB1	Q02891	456 aa		11.99	□□□□□ -0.49
SIM1	YIL123W	RPS3	P05750	240 aa	Known RBP	11.98	□□□□□ -0.49
SIM1	YIL123W	POX1	P13711	748 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	11.98	□□□□□ -0.49	not detected
SIM1	YIL123W	DAL2	P25335	343 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	TMT1	P32643	299 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	FLR1	P38124	548 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	HIS2	P38635	335 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	PHO86	P46956	311 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	DAS1	P47005	663 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	ACF4	P47129	309 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	ATG1	P53104	897 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	STE20	Q03497	939 aa	Known RBP	11.98	□□□□□ -0.49
SIM1	YIL123W	TRS130	Q03660	1102 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	MET7	Q08645	548 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	SPO21	Q12411	609 aa		11.98	□□□□□ -0.49
SIM1	YIL123W	YLR462W	O13556	202 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	SMY2	P32909	740 aa	Known RBP	11.97	□□□□□ -0.49
SIM1	YIL123W	MMS4	P38257	691 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	YHL049C	P38722	271 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	YEL075C	P39972	122 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	LCP5	P40079	357 aa	Predicted RBP	11.97	□□□□□ -0.49
SIM1	YIL123W	YER189W	P40104	122 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	YFL064C	P43540	174 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.97	□□□□□ -0.49	not detected
SIM1	YIL123W	MNP1	P53163	194 aa	Predicted RBP	11.97	□□□□□ -0.49
SIM1	YIL123W	YGR111W	P53265	400 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	APL5	Q08951	932 aa	Known RBP	11.97	□□□□□ -0.49
SIM1	YIL123W	RIO1	Q12196	484 aa	Known RBP	11.97	□□□□□ -0.49
SIM1	YIL123W	YBL111C	Q3E7Y5	667 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	AI5_BETA	Q9ZZX0	354 aa		11.97	□□□□□ -0.49
SIM1	YIL123W	COX11	P19516	300 aa	Known RBP	11.96	□□□□□ -0.49
SIM1	YIL123W	CBF2	P32504	956 aa		11.96	□□□□□ -0.49
SIM1	YIL123W	OLA1	P38219	394 aa	Known RBP	11.96	□□□□□ -0.49
SIM1	YIL123W	VID24	P38263	362 aa		11.96	□□□□□ -0.49
SIM1	YIL123W	RRT2	P38332	387 aa		11.96	□□□□□ -0.49
SIM1	YIL123W	DYS1	P38791	387 aa		11.96	□□□□□ -0.49
SIM1	YIL123W	BRO1	P48582	844 aa		11.96	□□□□□ -0.49
SIM1	YIL123W	CEF1	Q03654	590 aa	Predicted RBP	11.96	□□□□□ -0.49
SIM1	YIL123W	YML020W	Q03722	664 aa		11.96	□□□□□ -0.49
SIM1	YIL123W	ERV41	Q04651	352 aa		11.96	□□□□□ -0.49
SIM1	YIL123W	YDR222W	Q04925	415 aa		11.96	□□□□□ -0.49
SIM1	YIL123W	MAS2	P11914	482 aa		11.95	□□□□□ -0.5
SIM1	YIL123W	RNR1	P21524	888 aa	Known RBP	11.95	□□□□□ -0.5
SIM1	YIL123W	LAS1	P36146	502 aa	Predicted RBP	11.95	□□□□□ -0.5
SIM1	YIL123W	DRN1	P53255	507 aa	Known RBP	11.95	□□□□□ -0.5
SIM1	YIL123W	ATG16	Q03818	150 aa		11.95	□□□□□ -0.5
SIM1	YIL123W	YLR225C	Q05948	407 aa	Known RBP	11.95	□□□□□ -0.5
SIM1	YIL123W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	11.95	□□□□□ -0.5	not detected
SIM1	YIL123W	RRN6	P32786	894 aa		11.94	□□□□□ -0.5
SIM1	YIL123W	SKG6	P32900	734 aa	Predicted RBP	11.94	□□□□□ -0.5
SIM1	YIL123W	PTC4	P38089	393 aa		11.94	□□□□□ -0.5
SIM1	YIL123W	NCL1	P38205	684 aa	Known RBP	11.94	□□□□□ -0.5
SIM1	YIL123W	KSP1	P38691	1029 aa	Known RBP	11.94	□□□□□ -0.5
SIM1	YIL123W	YMR187C	Q03236	431 aa		11.94	□□□□□ -0.5
SIM1	YIL123W	SHS1	Q07657	551 aa		11.94	□□□□□ -0.5
SIM1	YIL123W	AIM41	Q12032	185 aa		11.94	□□□□□ -0.5
SIM1	YIL123W	SGT2	Q12118	346 aa	Known RBP	11.94	□□□□□ -0.5

Retrieved 100 of 5,963 RNA–protein pairs in 72.5 ms