Protein–RNA interactions for Protein: Q07807

PUF3, mRNA-binding protein PUF3, yeastyeast

Known RBP RIP-Chip data

Length 879 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
PUF3Q07807 NSR1YGR159C 1245 nt21.43■■□□□ 1.02
PUF3Q07807 YML009W-BYML009W-B 477 nt21.4■■□□□ 1.02
PUF3Q07807 NOP1YDL014W 984 nt20.75■□□□□ 0.91
PUF3Q07807 MDJ1YFL016C 1536 nt19.2■□□□□ 0.66
PUF3Q07807 YKL036CYKL036C 393 nt18.94■□□□□ 0.62
PUF3Q07807 SRX1YKL086W 384 nt18.09■□□□□ 0.49
PUF3Q07807 Q0297Q0297 156 nt18.04■□□□□ 0.48
PUF3Q07807 YJL027CYJL027C 417 nt17.75■□□□□ 0.43
PUF3Q07807 YCR051WYCR051W 669 nt17.19■□□□□ 0.34
PUF3Q07807 SCS3YGL126W 1143 nt17.09■□□□□ 0.33
PUF3Q07807 DBP2YNL112W 1641 nt16.86■□□□□ 0.29
PUF3Q07807 TRN1tP(UGG)A 72 nt16.45■□□□□ 0.22
PUF3Q07807 SUF9tP(UGG)F 72 nt16.45■□□□□ 0.22
PUF3Q07807 SUF8tP(UGG)H 72 nt16.45■□□□□ 0.22
PUF3Q07807 tP(UGG)LtP(UGG)L 72 nt16.45■□□□□ 0.22
PUF3Q07807 SUF7tP(UGG)M 72 nt16.45■□□□□ 0.22
PUF3Q07807 tP(UGG)N1tP(UGG)N1 72 nt16.45■□□□□ 0.22
PUF3Q07807 tP(UGG)N2tP(UGG)N2 72 nt16.45■□□□□ 0.22
PUF3Q07807 tP(UGG)O1tP(UGG)O1 72 nt16.45■□□□□ 0.22
PUF3Q07807 SUF11tP(UGG)O2 72 nt16.45■□□□□ 0.22
PUF3Q07807 YBR190WYBR190W 312 nt16.43■□□□□ 0.22
PUF3Q07807 YOL085CYOL085C 342 nt16.39■□□□□ 0.21
PUF3Q07807 CCC1YLR220W 969 nt16.35■□□□□ 0.21
PUF3Q07807 RPP1BYDL130W 321 nt16.21■□□□□ 0.19
PUF3Q07807 PKP1YIL042C 1185 nt16.18■□□□□ 0.18
PUF3Q07807 RTC3YHR087W 336 nt16.11■□□□□ 0.17
PUF3Q07807 RVS167YDR388W 1449 nt15.91■□□□□ 0.14
PUF3Q07807 SCJ1YMR214W 1134 nt15.7■□□□□ 0.1
PUF3Q07807 tP(UGG)O3tP(UGG)O3 72 nt15.52■□□□□ 0.08
PUF3Q07807 PET122YER153C 765 nt15.5■□□□□ 0.07
PUF3Q07807 SCR1SCR1 522 nt15.33■□□□□ 0.04
PUF3Q07807 SHR5YOL110W 714 nt15.27■□□□□ 0.04
PUF3Q07807 ATS1YAL020C 1002 nt15.24■□□□□ 0.03
PUF3Q07807 RRN5YLR141W 1092 nt15.05■□□□□ -0
PUF3Q07807 PUT4YOR348C 1884 nt15.02■□□□□ -0
PUF3Q07807 YDJ1YNL064C 1230 nt15.01□□□□□ -0.01
PUF3Q07807 URN1YPR152C 1398 nt14.98□□□□□ -0.01
PUF3Q07807 DEP1YAL013W 1218 nt14.92□□□□□ -0.02
PUF3Q07807 OPI9YLR338W 858 nt14.77□□□□□ -0.05
PUF3Q07807 SAH1YER043C 1350 nt14.74□□□□□ -0.05
PUF3Q07807 GAR1YHR089C 618 nt14.74□□□□□ -0.05
PUF3Q07807 RPN10YHR200W 807 nt14.74□□□□□ -0.05
PUF3Q07807 YER088W-BYER088W-B 147 nt14.73□□□□□ -0.05
PUF3Q07807 RSB1YOR049C 1065 nt14.7□□□□□ -0.06
PUF3Q07807 ARE1YCR048W 1833 nt14.7□□□□□ -0.06
PUF3Q07807 YNL208WYNL208W 600 nt14.66□□□□□ -0.06
PUF3Q07807 POA1YBR022W 534 nt14.59□□□□□ -0.07
PUF3Q07807 YHR049C-AYHR049C-A 297 nt14.54□□□□□ -0.08
PUF3Q07807 SSA3YBL075C 1950 nt14.48□□□□□ -0.09
PUF3Q07807 PUN1YLR414C 792 nt14.37□□□□□ -0.11
PUF3Q07807 BSC6YOL137W 1494 nt14.29□□□□□ -0.12
PUF3Q07807 YJR018WYJR018W 363 nt14.28□□□□□ -0.12
PUF3Q07807 BUD23YCR047C 828 nt14.24□□□□□ -0.13
PUF3Q07807 TIR1YER011W 765 nt14.24□□□□□ -0.13
PUF3Q07807 PTC2YER089C 1395 nt14.22□□□□□ -0.13
PUF3Q07807 PST2YDR032C 597 nt14.14□□□□□ -0.15
PUF3Q07807 SSA1YAL005C 1929 nt14.07□□□□□ -0.16
PUF3Q07807 NAB2YGL122C 1578 nt14.06□□□□□ -0.16
PUF3Q07807 RPP2BYDR382W 333 nt13.97□□□□□ -0.17
PUF3Q07807 YJR120WYJR120W 351 nt13.93□□□□□ -0.18
PUF3Q07807 FPR4YLR449W 1179 nt13.85□□□□□ -0.19
PUF3Q07807 DAL1YIR027C 1383 nt13.83□□□□□ -0.19 RIP-Chip
PUF3Q07807 INM2YDR287W 879 nt13.8□□□□□ -0.2
PUF3Q07807 FIS1YIL065C 468 nt13.78□□□□□ -0.2
PUF3Q07807 SRB2YHR041C 633 nt13.76□□□□□ -0.21
PUF3Q07807 PHO4YFR034C 939 nt13.69□□□□□ -0.22
PUF3Q07807 SPT5YML010W 3192 nt13.64□□□□□ -0.23
PUF3Q07807 YBL100CYBL100C 315 nt13.63□□□□□ -0.23
PUF3Q07807 SHU1YHL006C 453 nt13.61□□□□□ -0.23
PUF3Q07807 BDH2YAL061W 1254 nt13.61□□□□□ -0.23
PUF3Q07807 WWM1YFL010C 636 nt13.57□□□□□ -0.24
PUF3Q07807 YKL097CYKL097C 411 nt13.51□□□□□ -0.25
PUF3Q07807 YAL037C-BYAL037C-B 975 nt13.5□□□□□ -0.25
PUF3Q07807 YPS1YLR120C 1710 nt13.48□□□□□ -0.25
PUF3Q07807 FUN26YAL022C 1554 nt13.45□□□□□ -0.26
PUF3Q07807 YGR021WYGR021W 873 nt13.45□□□□□ -0.26 RIP-Chip
PUF3Q07807 TRM9YML014W 840 nt13.43□□□□□ -0.26
PUF3Q07807 MEP2YNL142W 1500 nt13.43□□□□□ -0.26
PUF3Q07807 YHR165W-AYHR165W-A 312 nt13.4□□□□□ -0.26
PUF3Q07807 LSM3YLR438C-A 270 nt13.4□□□□□ -0.26
PUF3Q07807 YDR095CYDR095C 411 nt13.37□□□□□ -0.27
PUF3Q07807 YFL021C-AYFL021C-A 855 nt13.36□□□□□ -0.27
PUF3Q07807 HOM6YJR139C 1080 nt13.35□□□□□ -0.27
PUF3Q07807 ALF1YNL148C 765 nt13.35□□□□□ -0.27
PUF3Q07807 SSA4YER103W 1929 nt13.31□□□□□ -0.28
PUF3Q07807 MNP1YGL068W 585 nt13.26□□□□□ -0.29 RIP-Chip
PUF3Q07807 CCT6YDR188W 1641 nt13.24□□□□□ -0.29
PUF3Q07807 DCW1YKL046C 1350 nt13.2□□□□□ -0.3
PUF3Q07807 SUF2tP(AGG)C 72 nt13.2□□□□□ -0.3
PUF3Q07807 SUF10tP(AGG)N 72 nt13.2□□□□□ -0.3
PUF3Q07807 RKM5YLR137W 1104 nt13.17□□□□□ -0.3
PUF3Q07807 RPP2AYOL039W 321 nt13.15□□□□□ -0.3
PUF3Q07807 SIS1YNL007C 1059 nt13.09□□□□□ -0.31
PUF3Q07807 PTP1YDL230W 1008 nt13.06□□□□□ -0.32
PUF3Q07807 EMI2YDR516C 1503 nt13.06□□□□□ -0.32
PUF3Q07807 YMR090WYMR090W 684 nt13.04□□□□□ -0.32
PUF3Q07807 CAC2YML102W 1407 nt13□□□□□ -0.33
PUF3Q07807 YOL037CYOL037C 354 nt12.99□□□□□ -0.33
PUF3Q07807 NPL3YDR432W 1245 nt12.96□□□□□ -0.33
PUF3Q07807 YOR139CYOR139C 393 nt12.95□□□□□ -0.34
Retrieved 100 of 7,029 protein–RNA pairs in 12.4 ms