RNA–Protein interactions for RNA: YGL103W

RPL28, Transcript of Ribosomal 60S subunit protein L28, yeast

Gene RPL28, Length 450 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPL28	YGL103W	RTP1	Q12751	981 aa		5.23	□□□□□ -1.57
RPL28	YGL103W	SNF1	P06782	633 aa	Known RBP	5.22	□□□□□ -1.57
RPL28	YGL103W	SAM2	P19358	384 aa	Known RBP	5.22	□□□□□ -1.57
RPL28	YGL103W	VMA4	P22203	233 aa	Known RBP	5.22	□□□□□ -1.57
RPL28	YGL103W	MRPL25	P23369	157 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	SCJ1	P25303	377 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	RRN6	P32786	894 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	YBL055C	P34220	418 aa	Predicted RBP	5.22	□□□□□ -1.57
RPL28	YGL103W	MSG5	P38590	489 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	ERP5	P38819	212 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	ULP2	P40537	1034 aa	Predicted RBP	5.22	□□□□□ -1.57
RPL28	YGL103W	AXL1	P40851	1208 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	VID30	P53076	958 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	PCL10	P53124	433 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	ESBP6	P53918	673 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	UBX4	P54730	416 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.22	□□□□□ -1.57	RIP-Chip
RPL28	YGL103W	MTG1	Q03151	367 aa	Predicted RBP	5.22	□□□□□ -1.57
RPL28	YGL103W	ATP25	Q03153	612 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	OSW1	Q08692	278 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	OCA6	Q12454	224 aa		5.22	□□□□□ -1.57
RPL28	YGL103W	CDC33	P07260	213 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	PCK1	P10963	549 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	PHO8	P11491	566 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	CLN3	P13365	580 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	RAD51	P25454	400 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	RPC19	P28000	142 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	SEC21	P32074	935 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	SIN4	P32259	974 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	EUG1	P32474	517 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	NCL1	P38205	684 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	END3	P39013	349 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	NPR2	P39923	615 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	RPN3	P40016	523 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	VPS4	P52917	437 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	YNL011C	P53980	444 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	RPL22B	P56628	122 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	TIM8	P57744	87 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	SEN54	Q02825	467 aa	Predicted RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	OYE2	Q03558	400 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	TMA64	Q04600	565 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	YDR278C	Q05612	105 aa		5.21	□□□□□ -1.58
RPL28	YGL103W	YDL124W	Q07551	312 aa	Known RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	GPN2	Q08726	347 aa	Predicted RBP	5.21	□□□□□ -1.58
RPL28	YGL103W	THS1	P04801	734 aa	Known RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	CMD1	P06787	147 aa	Known RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	ILV2	P07342	687 aa	Known RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	SRD1	P09007	221 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	SIT4	P20604	311 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
RPL28	YGL103W	RPS7A	P26786	190 aa	Known RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	HEM3	P28789	327 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	PUP2	P32379	260 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	RAD54	P32863	898 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	PTC3	P34221	468 aa	Known RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	YEL1	P34225	687 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	BDF1	P35817	686 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	UBP13	P38187	747 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	YBP1	P38315	674 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	POP4	P38336	279 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	HSM3	P38348	480 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	MMS21	P38632	267 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	PAN5	P38787	379 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	NDT80	P38830	627 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	LIN1	P38852	340 aa	Predicted RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	TDA11	P38854	504 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	YMR134W	P40207	237 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	MDJ2	P42834	146 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	TAF6	P53040	516 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	MCM6	P53091	1017 aa	Known RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	PXR1	P53335	271 aa	Predicted RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	COS6	P53344	381 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	DIP5	P53388	608 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	COG6	P53959	839 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	YNL040W	P53960	456 aa	Predicted RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	CEF1	Q03654	590 aa	Predicted RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	FUS2	Q05670	677 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	UTP4	Q06679	776 aa	Known RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
RPL28	YGL103W	CDC53	Q12018	815 aa	Known RBP	5.2	□□□□□ -1.58
RPL28	YGL103W	RUP1	Q12242	671 aa		5.2	□□□□□ -1.58
RPL28	YGL103W	RPL24A	P04449	155 aa	Known RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	GCR1	P07261	785 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	PEP5	P12868	1029 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	CBF1	P17106	351 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	AAD3	P25612	363 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	KIP1	P28742	1111 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	PYC2	P32327	1180 aa	Known RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	CBF2	P32504	956 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	PGM1	P33401	570 aa	Known RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	SEG2	P34250	1132 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	RRP14	P36080	434 aa	Known RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	CST26	P38226	397 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	RFC3	P38629	340 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	LAM1	P38851	1228 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	SIP5	P40210	489 aa	Known RBP	5.19	□□□□□ -1.58
RPL28	YGL103W	YTA12	P40341	825 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	FIG4	P42837	879 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	SET4	P42948	560 aa		5.19	□□□□□ -1.58
RPL28	YGL103W	YFR006W	P43590	535 aa		5.19	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms