RNA–Protein interactions for RNA: YEL027W

VMA3, Transcript of Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase, yeast

Gene VMA3, Length 483 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA3	YEL027W	CHS2	P14180	963 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	SEC65	P29478	273 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	SEC21	P32074	935 aa	Known RBP	7.01	□□□□□ -1.29
VMA3	YEL027W	MUD1	P32605	298 aa	Known RBP	7.01	□□□□□ -1.29
VMA3	YEL027W	RPT1	P33299	467 aa	Known RBP	7.01	□□□□□ -1.29
VMA3	YEL027W	RPC25	P35718	212 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	PXL1	P36166	706 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	SHM1	P37292	490 aa	Predicted RBP	7.01	□□□□□ -1.29
VMA3	YEL027W	RDH54	P38086	958 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	SSB2	P40150	613 aa	Known RBP	7.01	□□□□□ -1.29
VMA3	YEL027W	MMF1	P40185	145 aa	Known RBP	7.01	□□□□□ -1.29
VMA3	YEL027W	FIG4	P42837	879 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	COS5	P47187	383 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	TIM8	P57744	87 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	UTP14	Q04500	899 aa	Known RBP	7.01	□□□□□ -1.29
VMA3	YEL027W	DON1	Q05610	365 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	MLH2	Q07980	695 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	PLP2	Q12017	286 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	YOR022C	Q12204	715 aa		7.01	□□□□□ -1.29
VMA3	YEL027W	COX4	P04037	155 aa		7	□□□□□ -1.29
VMA3	YEL027W	TOM70	P07213	617 aa	Known RBP	7	□□□□□ -1.29
VMA3	YEL027W	RSA4	P25382	515 aa	Known RBP	7	□□□□□ -1.29
VMA3	YEL027W	BIO2	P32451	375 aa		7	□□□□□ -1.29
VMA3	YEL027W	XDJ1	P39102	459 aa		7	□□□□□ -1.29
VMA3	YEL027W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	7	□□□□□ -1.29	RIP-Chip
VMA3	YEL027W	ZPS1	Q12512	249 aa		7	□□□□□ -1.29
VMA3	YEL027W	CYC8	P14922	966 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	VMA1	P17255	1071 aa	Known RBP	6.99	□□□□□ -1.29
VMA3	YEL027W	SPC110	P32380	944 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	6.99	□□□□□ -1.29	not detected
VMA3	YEL027W	CCL1	P37366	393 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	APM2	P38700	605 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	NPP2	P39997	493 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	6.99	□□□□□ -1.29	not detected
VMA3	YEL027W	HSH155	P49955	971 aa	Known RBP	6.99	□□□□□ -1.29
VMA3	YEL027W	ORC5	P50874	479 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	HFM1	P51979	1187 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	ENV11	P53246	860 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	TRS130	Q03660	1102 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	YLR287C	Q05881	355 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	PIG1	Q06216	648 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	ESC8	Q08119	714 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	CWC2	Q12046	339 aa	Predicted RBP	6.99	□□□□□ -1.29
VMA3	YEL027W	PKH2	Q12236	1081 aa	Known RBP	6.99	□□□□□ -1.29
VMA3	YEL027W	YLR422W	Q06409	1932 aa		6.99	□□□□□ -1.29
VMA3	YEL027W	HEL1	P36113	551 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	MMS4	P38257	691 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	RTT107	P38850	1070 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	VFA1	P40080	203 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	YER186C	P40101	306 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	STR2	P47164	639 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	ASN1	P49089	572 aa	Known RBP	6.98	□□□□□ -1.29
VMA3	YEL027W	YGR130C	P53278	816 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	ALG11	P53954	548 aa	Known RBP	6.98	□□□□□ -1.29
VMA3	YEL027W	SPP1	Q03012	353 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	YLR297W	Q05899	129 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	DNL4	Q08387	944 aa	Predicted RBP	6.98	□□□□□ -1.29
VMA3	YEL027W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	6.98	□□□□□ -1.29	not detected
VMA3	YEL027W	ATG9	Q12142	997 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	MNL2	Q12205	849 aa		6.98	□□□□□ -1.29
VMA3	YEL027W	RAD54	P32863	898 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	GCS1	P35197	352 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	YKL023W	P36103	277 aa	Known RBP	6.97	□□□□□ -1.29
VMA3	YEL027W	CCC2	P38995	1004 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	YEL023C	P39992	682 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	FTR1	P40088	404 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	SDS3	P40505	327 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	SMC3	P47037	1230 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	CWC21	Q03375	135 aa	Known RBP	6.97	□□□□□ -1.29
VMA3	YEL027W	MRI1	Q06489	411 aa	Known RBP	6.97	□□□□□ -1.29
VMA3	YEL027W	YCG1	Q06680	1035 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	CSR1	Q06705	408 aa	Known RBP	6.97	□□□□□ -1.29
VMA3	YEL027W	SHS1	Q07657	551 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	SDH5	Q08230	162 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	HMI1	Q12039	706 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	RRP6	Q12149	733 aa	Known RBP	6.97	□□□□□ -1.29
VMA3	YEL027W	PUS1	Q12211	544 aa	Known RBP	6.97	□□□□□ -1.29
VMA3	YEL027W	OSH2	Q12451	1283 aa		6.97	□□□□□ -1.29
VMA3	YEL027W	HAP2	P06774	265 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	NAT1	P12945	854 aa	Known RBP	6.96	□□□□□ -1.3
VMA3	YEL027W	COQ8	P27697	501 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	NIP100	P33420	868 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	TRM2	P33753	639 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	SMC2	P38989	1170 aa	Known RBP	6.96	□□□□□ -1.3
VMA3	YEL027W	YIR016W	P40572	265 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	YAP5	P40574	245 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	RPA49	Q01080	415 aa	Predicted RBP	6.96	□□□□□ -1.3
VMA3	YEL027W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	6.96	□□□□□ -1.3	RIP-Chip
VMA3	YEL027W	UME1	Q03010	460 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	RCR2	Q03446	210 aa	Known RBP	6.96	□□□□□ -1.3
VMA3	YEL027W	YLR257W	Q06146	321 aa	Known RBP	6.96	□□□□□ -1.3
VMA3	YEL027W	YPR078C	Q06813	372 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	SLX4	Q12098	748 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	SGT2	Q12118	346 aa	Known RBP	6.96	□□□□□ -1.3
VMA3	YEL027W	RAD59	Q12223	238 aa		6.96	□□□□□ -1.3
VMA3	YEL027W	RPL4A	P10664	362 aa	Known RBP	6.95	□□□□□ -1.3
VMA3	YEL027W	PRR1	P28708	518 aa		6.95	□□□□□ -1.3
VMA3	YEL027W	SWI3	P32591	825 aa		6.95	□□□□□ -1.3
VMA3	YEL027W	SMC1	P32908	1225 aa		6.95	□□□□□ -1.3
VMA3	YEL027W	XRS2	P33301	854 aa		6.95	□□□□□ -1.3

Retrieved 100 of 5,963 RNA–protein pairs in 46.9 ms