RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	RPL8B	P29453	256 aa	Known RBP	4.59	□□□□□ -1.67
UBP6	YFR010W	UGA4	P32837	571 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	PRP40	P33203	583 aa	Known RBP	4.59	□□□□□ -1.67
UBP6	YFR010W	TFC4	P33339	1025 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	EXO5	P38289	585 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	YBR184W	P38299	523 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	FAA3	P39002	694 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	VPS8	P39702	1274 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	GPD2	P41911	440 aa	Known RBP	4.59	□□□□□ -1.67
UBP6	YFR010W	YNR063W	P53749	607 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	YNL193W	P53870	558 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	VTC3	Q02725	835 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	SGD1	Q06132	899 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	OPY2	Q06810	360 aa		4.59	□□□□□ -1.67
UBP6	YFR010W	RIX7	Q07844	837 aa	Known RBP	4.59	□□□□□ -1.67
UBP6	YFR010W	TMA46	Q12000	345 aa	Known RBP	4.59	□□□□□ -1.67
UBP6	YFR010W	PGS1	P25578	521 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	POL4	P25615	582 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	SCT1	P32784	759 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	LIP5	P32875	414 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	NIC96	P34077	839 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	BCD1	P38772	366 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	VPS41	P38959	992 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	HUL4	P40985	892 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	RSC8	P43609	557 aa	Known RBP	4.58	□□□□□ -1.68
UBP6	YFR010W	RTA1	P53047	317 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	PAP2	P53632	584 aa	Known RBP	4.58	□□□□□ -1.68
UBP6	YFR010W	YLH47	Q06493	454 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	MLC2	Q06580	163 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	RTT10	Q08924	1013 aa		4.58	□□□□□ -1.68
UBP6	YFR010W	FAL1	Q12099	399 aa	Known RBP	4.58	□□□□□ -1.68
UBP6	YFR010W	TUF1	P02992	437 aa	Known RBP	4.57	□□□□□ -1.68
UBP6	YFR010W	DPH2	P32461	534 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	WHI3	P34761	661 aa	Known RBP	4.57	□□□□□ -1.68
UBP6	YFR010W	YHL041W	P38730	149 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	MMM1	P41800	426 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	CNN1	P43618	361 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	SAE2	P46946	345 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	CTH1	P47976	325 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	PBP1	P53297	722 aa	Known RBP	4.57	□□□□□ -1.68
UBP6	YFR010W	RIA1	P53893	1110 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	RNH1	Q04740	348 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	RSC58	Q07979	502 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	AVO1	Q08236	1176 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	LAP2	Q10740	671 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	SCM3	Q12334	223 aa		4.57	□□□□□ -1.68
UBP6	YFR010W	SPO16	P17122	198 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
UBP6	YFR010W	NIP100	P33420	868 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	ARL1	P38116	183 aa	Known RBP	4.56	□□□□□ -1.68
UBP6	YFR010W	KTR4	P38131	464 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	LRP1	P38801	184 aa	Known RBP	4.56	□□□□□ -1.68
UBP6	YFR010W	SHU2	P38957	223 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	GEM1	P39722	662 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	GPP2	P40106	250 aa	Known RBP	4.56	□□□□□ -1.68
UBP6	YFR010W	YIL166C	P40445	542 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	KEL2	P50090	882 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	YML6	P51998	286 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	MAL11	P53048	616 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	MEP3	P53390	489 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	TAF8	Q03750	510 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	RAD33	Q04231	177 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	BRE4	Q07660	1125 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	FMP25	Q08023	583 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	GLK1	P17709	500 aa	Known RBP	4.56	□□□□□ -1.68
UBP6	YFR010W	YKL133C	P36066	463 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	YKL077W	P36081	392 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	PIM1	P36775	1133 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	NEM1	P38757	446 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	SLS1	P42900	643 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	CIT3	P43635	486 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	IML2	P47031	731 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	OCA1	P50946	238 aa	Predicted RBP	4.56	□□□□□ -1.68
UBP6	YFR010W	SDH1	Q00711	640 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
UBP6	YFR010W	ULP1	Q02724	621 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	NOG1	Q02892	647 aa	Known RBP	4.56	□□□□□ -1.68
UBP6	YFR010W	VPS30	Q02948	557 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	ADI1	Q03677	179 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	HFD1	Q04458	532 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	SWA2	Q06677	668 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	YLR001C	Q07895	862 aa		4.56	□□□□□ -1.68
UBP6	YFR010W	GCD1	P09032	578 aa	Predicted RBP	4.55	□□□□□ -1.68
UBP6	YFR010W	MRP7	P12687	371 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	BAS1	P22035	811 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	MSH3	P25336	1018 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	KCC4	P25389	1037 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	RAD16	P31244	790 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	TYS1	P36421	394 aa	Known RBP	4.55	□□□□□ -1.68
UBP6	YFR010W	BAP2	P38084	609 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	SEA4	P38164	1038 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	ACA1	P39970	489 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	JEM1	P40358	645 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	RET2	P43621	546 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	RSM26	P47141	266 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	HSV2	P50079	448 aa	Predicted RBP	4.55	□□□□□ -1.68
UBP6	YFR010W	ALT1	P52893	592 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	ERP6	P53198	216 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	YGR045C	P53229	120 aa		4.55	□□□□□ -1.68
UBP6	YFR010W	SNP1	Q00916	300 aa	Predicted RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms