RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP6YFR010W MTC1P47018 478 aaKnown RBP11.89□□□□□ -0.51
UBP6YFR010W FAP1P53971 965 aa11.57□□□□□ -0.56
UBP6YFR010W PRY3P47033 881 aa10.89□□□□□ -0.67
UBP6YFR010W DRS1P32892 752 aaKnown RBP10.88□□□□□ -0.67
UBP6YFR010W AAD16Q02895 342 aa10.47□□□□□ -0.73
UBP6YFR010W PRI1P10363 409 aa10.42□□□□□ -0.74
UBP6YFR010W YCK3P39962 524 aa10.17□□□□□ -0.78
UBP6YFR010W HAA1Q12753 694 aaKnown RBP10.14□□□□□ -0.79
UBP6YFR010W ISW2Q08773 1120 aa10.04□□□□□ -0.8
UBP6YFR010W RPG1P38249 964 aaKnown RBP9.97□□□□□ -0.81
UBP6YFR010W TSR3Q12094 313 aaKnown RBP9.85□□□□□ -0.83
UBP6YFR010W MRPL32P25348 183 aa9.47□□□□□ -0.89
UBP6YFR010W DIP2Q12220 943 aaPredicted RBP9.42□□□□□ -0.9
UBP6YFR010W RSE1Q04693 1361 aaKnown RBP9.3□□□□□ -0.92
UBP6YFR010W YGL015CP33199 130 aa9.26□□□□□ -0.93
UBP6YFR010W BFR2Q06631 534 aaKnown RBP9.18□□□□□ -0.94
UBP6YFR010W AVT3P36062 692 aa9.17□□□□□ -0.94
UBP6YFR010W REB1P21538 810 aa9.1□□□□□ -0.95
UBP6YFR010W RPL17AP05740 184 aaKnown RBP9.05□□□□□ -0.96
UBP6YFR010W RPL17BP46990 184 aaKnown RBP9.05□□□□□ -0.96
UBP6YFR010W CDC27P38042 758 aa8.84□□□□□ -0.99
UBP6YFR010W BUD31P25337 157 aaPredicted RBP8.77□□□□□ -1.01
UBP6YFR010W UBP10P53874 792 aaPredicted RBP8.66□□□□□ -1.02
UBP6YFR010W MAP2P38174 421 aaKnown RBP8.65□□□□□ -1.02
UBP6YFR010W YKR023WP36119 530 aaKnown RBP8.64□□□□□ -1.03
UBP6YFR010W SPT21P35209 758 aa8.55□□□□□ -1.04
UBP6YFR010W HOP09932 586 aa8.5□□□□□ -1.05
UBP6YFR010W DCD1P06773 312 aa8.49□□□□□ -1.05
UBP6YFR010W TFC8Q12308 588 aa8.46□□□□□ -1.05
UBP6YFR010W SCY1P53009 804 aa8.38□□□□□ -1.07
UBP6YFR010W TIF4632P39936 914 aaKnown RBP8.36□□□□□ -1.07
UBP6YFR010W SIS1P25294 352 aaKnown RBP8.34□□□□□ -1.08
UBP6YFR010W SLX5P32828 619 aaKnown RBP8.3□□□□□ -1.08
UBP6YFR010W TGL3P40308 642 aa8.3□□□□□ -1.08
UBP6YFR010W UBP9P39967 754 aa8.29□□□□□ -1.08
UBP6YFR010W TFA1P36100 482 aa8.28□□□□□ -1.08
UBP6YFR010W BCH2P36122 765 aa8.17□□□□□ -1.1
UBP6YFR010W RIM101P33400 625 aa8.14□□□□□ -1.11
UBP6YFR010W EPS1P40557 701 aa7.92□□□□□ -1.14
UBP6YFR010W BDF1P35817 686 aa7.9□□□□□ -1.14
UBP6YFR010W OXP1P28273 1286 aa7.88□□□□□ -1.15
UBP6YFR010W YBL029C-AQ3E756 94 aa7.88□□□□□ -1.15
UBP6YFR010W MST1P07236 462 aa7.83□□□□□ -1.16
UBP6YFR010W YOR238WQ08634 303 aa7.83□□□□□ -1.16
UBP6YFR010W PTP3P40048 928 aa7.79□□□□□ -1.16
UBP6YFR010W YIL055CP40523 627 aaKnown RBP7.78□□□□□ -1.16
UBP6YFR010W VNX1P42839 908 aa7.74□□□□□ -1.17
UBP6YFR010W SPP1Q03012 353 aa7.7□□□□□ -1.18
UBP6YFR010W YAH1Q12184 172 aaKnown RBP7.69□□□□□ -1.18
UBP6YFR010W BBC1P47068 1157 aa7.68□□□□□ -1.18
UBP6YFR010W WSC3Q12215 556 aa7.68□□□□□ -1.18
UBP6YFR010W NSR1P27476 414 aaKnown RBP RIP-Chip data7.68□□□□□ -1.18not detected
UBP6YFR010W YAP5P40574 245 aa7.68□□□□□ -1.18
UBP6YFR010W RSM7P47150 247 aa7.64□□□□□ -1.19
UBP6YFR010W AI2P03876 854 aa7.61□□□□□ -1.19
UBP6YFR010W YJL171CP46992 396 aa7.6□□□□□ -1.19
UBP6YFR010W YLR271WQ06152 274 aa7.58□□□□□ -1.2
UBP6YFR010W GTT3P39996 337 aa7.57□□□□□ -1.2
UBP6YFR010W AIR2Q12476 344 aaKnown RBP7.57□□□□□ -1.2
UBP6YFR010W TIF11P38912 153 aaKnown RBP7.56□□□□□ -1.2
UBP6YFR010W SSP1P38871 571 aa7.55□□□□□ -1.2
UBP6YFR010W FKH1P40466 484 aa7.52□□□□□ -1.2
UBP6YFR010W RQC2Q12532 1038 aaKnown RBP7.47□□□□□ -1.21
UBP6YFR010W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.47□□□□□ -1.21not detected
UBP6YFR010W LDB19Q12502 818 aa7.46□□□□□ -1.22
UBP6YFR010W PSD2P53037 1138 aaKnown RBP7.45□□□□□ -1.22
UBP6YFR010W ULI1P43604 169 aa7.44□□□□□ -1.22
UBP6YFR010W PIB1Q06651 286 aa7.43□□□□□ -1.22
UBP6YFR010W BMT6Q12291 365 aa7.41□□□□□ -1.22
UBP6YFR010W IOC2Q12072 812 aa7.39□□□□□ -1.23
UBP6YFR010W MGA2P40578 1113 aa7.34□□□□□ -1.23
UBP6YFR010W CST9Q06032 482 aa7.34□□□□□ -1.23
UBP6YFR010W MRM1P25270 412 aa7.31□□□□□ -1.24
UBP6YFR010W MSB4Q12317 492 aa7.3□□□□□ -1.24
UBP6YFR010W EAP1P36041 632 aaKnown RBP7.29□□□□□ -1.24
UBP6YFR010W TAF7Q05021 590 aa7.29□□□□□ -1.24
UBP6YFR010W RTG1P32607 177 aa7.27□□□□□ -1.25
UBP6YFR010W SET4P42948 560 aa7.26□□□□□ -1.25
UBP6YFR010W YOL036WQ08206 761 aa7.24□□□□□ -1.25
UBP6YFR010W NCR1Q12200 1170 aa7.24□□□□□ -1.25
UBP6YFR010W TRP5P00931 707 aaKnown RBP7.23□□□□□ -1.25
UBP6YFR010W YMR1P47147 688 aaKnown RBP RIP-Chip data7.17□□□□□ -1.26not detected
UBP6YFR010W YNL035CP53962 389 aaKnown RBP7.17□□□□□ -1.26
UBP6YFR010W DBP1P24784 617 aaKnown RBP7.17□□□□□ -1.26
UBP6YFR010W SEC61P32915 480 aa7.16□□□□□ -1.26
UBP6YFR010W YFR006WP43590 535 aa7.16□□□□□ -1.26
UBP6YFR010W RTG3P38165 486 aa7.15□□□□□ -1.27
UBP6YFR010W RCR1P38212 213 aa7.15□□□□□ -1.27
UBP6YFR010W VPS29P38759 282 aa7.13□□□□□ -1.27
UBP6YFR010W TFG1P41895 735 aaPredicted RBP7.12□□□□□ -1.27
UBP6YFR010W VMA1P17255 1071 aaKnown RBP7.11□□□□□ -1.27
UBP6YFR010W SAP30P38429 201 aa7.07□□□□□ -1.28
UBP6YFR010W STS1P38637 319 aa7.07□□□□□ -1.28
UBP6YFR010W SAM3Q08986 587 aa7.06□□□□□ -1.28
UBP6YFR010W BCK2P33306 851 aa7.02□□□□□ -1.29
UBP6YFR010W JIP4Q03361 876 aa7.01□□□□□ -1.29
UBP6YFR010W DAN4P47179 1161 aa7.01□□□□□ -1.29
UBP6YFR010W RAM2P29703 316 aa7□□□□□ -1.29
UBP6YFR010W CHL1P22516 861 aaPredicted RBP6.99□□□□□ -1.29
UBP6YFR010W YDL129WQ07555 291 aa6.99□□□□□ -1.29
Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms