RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	FIG4	P42837	879 aa		11.68	□□□□□ -0.54
VPS60	YDR486C	JJJ3	P47138	172 aa		11.68	□□□□□ -0.54
VPS60	YDR486C	ORC5	P50874	479 aa		11.68	□□□□□ -0.54
VPS60	YDR486C	YLR287C	Q05881	355 aa		11.68	□□□□□ -0.54
VPS60	YDR486C	RRP6	Q12149	733 aa	Known RBP	11.68	□□□□□ -0.54
VPS60	YDR486C	SWI6	P09959	803 aa		11.67	□□□□□ -0.54
VPS60	YDR486C	MSS51	P32335	436 aa		11.67	□□□□□ -0.54
VPS60	YDR486C	KTR2	P33550	425 aa		11.67	□□□□□ -0.54
VPS60	YDR486C	MNR2	P35724	969 aa		11.67	□□□□□ -0.54
VPS60	YDR486C	YKL023W	P36103	277 aa	Known RBP	11.67	□□□□□ -0.54
VPS60	YDR486C	MNP1	P53163	194 aa	Predicted RBP	11.67	□□□□□ -0.54
VPS60	YDR486C	CUS1	Q02554	436 aa	Predicted RBP	11.67	□□□□□ -0.54
VPS60	YDR486C	UME1	Q03010	460 aa		11.67	□□□□□ -0.54
VPS60	YDR486C	VPS72	Q03388	795 aa		11.67	□□□□□ -0.54
VPS60	YDR486C	UTP14	Q04500	899 aa	Known RBP	11.67	□□□□□ -0.54
VPS60	YDR486C	HMI1	Q12039	706 aa		11.67	□□□□□ -0.54
VPS60	YDR486C	ATG9	Q12142	997 aa		11.67	□□□□□ -0.54
VPS60	YDR486C	VMA1	P17255	1071 aa	Known RBP	11.66	□□□□□ -0.54
VPS60	YDR486C	DUR3	P33413	735 aa		11.66	□□□□□ -0.54
VPS60	YDR486C	VID24	P38263	362 aa		11.66	□□□□□ -0.54
VPS60	YDR486C	LEO1	P38439	464 aa		11.66	□□□□□ -0.54
VPS60	YDR486C	HSH155	P49955	971 aa	Known RBP	11.66	□□□□□ -0.54
VPS60	YDR486C	SHE10	P53075	577 aa		11.66	□□□□□ -0.54
VPS60	YDR486C	YLR297W	Q05899	129 aa		11.66	□□□□□ -0.54
VPS60	YDR486C	ECM7	Q06200	448 aa		11.66	□□□□□ -0.54
VPS60	YDR486C	PLP2	Q12017	286 aa		11.66	□□□□□ -0.54
VPS60	YDR486C	WHI2	P12611	486 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	SPC110	P32380	944 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	XRS2	P33301	854 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	MFT1	P33441	392 aa	Known RBP	11.65	□□□□□ -0.54
VPS60	YDR486C	UIP5	P36137	443 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	LDH1	P38139	375 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	NPP2	P39997	493 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	COS5	P47187	383 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	ASN1	P49089	572 aa	Known RBP	11.65	□□□□□ -0.54
VPS60	YDR486C	AZR1	P50080	613 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	TRS130	Q03660	1102 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	SLX4	Q12098	748 aa		11.65	□□□□□ -0.54
VPS60	YDR486C	TUP1	P16649	713 aa		11.64	□□□□□ -0.55
VPS60	YDR486C	SPO12	P17123	173 aa		11.64	□□□□□ -0.55
VPS60	YDR486C	PCH2	P38126	564 aa		11.64	□□□□□ -0.55
VPS60	YDR486C	YCG1	Q06680	1035 aa		11.64	□□□□□ -0.55
VPS60	YDR486C	PPR1	P07272	904 aa	Predicted RBP	11.63	□□□□□ -0.55
VPS60	YDR486C	RRP43	P25359	394 aa	Predicted RBP	11.63	□□□□□ -0.55
VPS60	YDR486C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	11.63	□□□□□ -0.55	not detected
VPS60	YDR486C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	11.63	□□□□□ -0.55	not detected
VPS60	YDR486C	TAD1	P53065	400 aa		11.63	□□□□□ -0.55
VPS60	YDR486C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	11.63	□□□□□ -0.55	not detected
VPS60	YDR486C	CSR1	Q06705	408 aa	Known RBP	11.63	□□□□□ -0.55
VPS60	YDR486C	ZPS1	Q12512	249 aa		11.63	□□□□□ -0.55
VPS60	YDR486C	MOT1	P32333	1867 aa		11.63	□□□□□ -0.55
VPS60	YDR486C	NIP100	P33420	868 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	ATG3	P40344	310 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	SDS3	P40505	327 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	INP51	P40559	946 aa	Known RBP	11.62	□□□□□ -0.55
VPS60	YDR486C	IES1	P43579	692 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	OSW7	P43611	510 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	ERG5	P54781	538 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	YPR078C	Q06813	372 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	SHS1	Q07657	551 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	NEW1	Q08972	1196 aa	Known RBP	11.62	□□□□□ -0.55
VPS60	YDR486C	YDL206W	Q12424	762 aa		11.62	□□□□□ -0.55
VPS60	YDR486C	COX4	P04037	155 aa		11.61	□□□□□ -0.55
VPS60	YDR486C	PDC6	P26263	563 aa	Known RBP	11.61	□□□□□ -0.55
VPS60	YDR486C	SKG6	P32900	734 aa	Predicted RBP	11.61	□□□□□ -0.55
VPS60	YDR486C	SMC1	P32908	1225 aa		11.61	□□□□□ -0.55
VPS60	YDR486C	MRX3	P38172	270 aa		11.61	□□□□□ -0.55
VPS60	YDR486C	MMS4	P38257	691 aa		11.61	□□□□□ -0.55
VPS60	YDR486C	ALD5	P40047	520 aa	Known RBP	11.61	□□□□□ -0.55
VPS60	YDR486C	SHQ1	P40486	507 aa	Predicted RBP	11.61	□□□□□ -0.55
VPS60	YDR486C	YAP5	P40574	245 aa		11.61	□□□□□ -0.55
VPS60	YDR486C	CTR9	P89105	1077 aa		11.61	□□□□□ -0.55
VPS60	YDR486C	MUK1	Q02866	612 aa		11.61	□□□□□ -0.55
VPS60	YDR486C	VPS38	Q05919	439 aa		11.61	□□□□□ -0.55
VPS60	YDR486C	TVP23	P38962	199 aa		11.6	□□□□□ -0.55
VPS60	YDR486C	TOM70	P07213	617 aa	Known RBP	11.59	□□□□□ -0.55
VPS60	YDR486C	RPL4A	P10664	362 aa	Known RBP	11.59	□□□□□ -0.55
VPS60	YDR486C	IME1	P21190	360 aa		11.59	□□□□□ -0.55
VPS60	YDR486C	CDC11	P32458	415 aa		11.59	□□□□□ -0.55
VPS60	YDR486C	PAM1	P37304	830 aa	Known RBP	11.59	□□□□□ -0.55
VPS60	YDR486C	KIC1	P38692	1080 aa		11.59	□□□□□ -0.55
VPS60	YDR486C	RPL4B	P49626	362 aa	Known RBP	11.59	□□□□□ -0.55
VPS60	YDR486C	TBF1	Q02457	562 aa		11.59	□□□□□ -0.55
VPS60	YDR486C	DOT1	Q04089	582 aa	Known RBP	11.59	□□□□□ -0.55
VPS60	YDR486C	YDR524C-B	Q3E6R4	66 aa		11.59	□□□□□ -0.55
VPS60	YDR486C	MTF2	P10849	440 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	GLN3	P18494	730 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	ADE2	P21264	571 aa	Known RBP	11.58	□□□□□ -0.56
VPS60	YDR486C	KIP1	P28742	1111 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	SWI3	P32591	825 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	RAD54	P32863	898 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	SMC2	P38989	1170 aa	Known RBP	11.58	□□□□□ -0.56
VPS60	YDR486C	FTR1	P40088	404 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	MMM1	P41800	426 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	SGM1	P47166	707 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	ALF1	P53904	254 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	ESBP6	P53918	673 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	CEF1	Q03654	590 aa	Predicted RBP	11.58	□□□□□ -0.56
VPS60	YDR486C	RGA2	Q06407	1009 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	YOL098C	Q12496	1037 aa		11.58	□□□□□ -0.56

Retrieved 100 of 5,963 RNA–protein pairs in 102 ms