RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W CEF1Q03654 590 aaPredicted RBP5.04□□□□□ -1.6
PRE9YGR135W SPO71Q03868 1245 aa5.04□□□□□ -1.6
PRE9YGR135W LSP1Q12230 341 aaKnown RBP5.04□□□□□ -1.6
PRE9YGR135W TMA7Q3E764 64 aaKnown RBP5.04□□□□□ -1.6
PRE9YGR135W NUP192P47054 1683 aa5.04□□□□□ -1.6
PRE9YGR135W HAP1P0CE41 1502 aa5.03□□□□□ -1.6
PRE9YGR135W DED1P06634 604 aaKnown RBP5.03□□□□□ -1.6
PRE9YGR135W TRX2P22803 104 aaKnown RBP5.03□□□□□ -1.6
PRE9YGR135W PWP2P25635 923 aaKnown RBP5.03□□□□□ -1.6
PRE9YGR135W FUI1P38196 639 aa5.03□□□□□ -1.6
PRE9YGR135W SAF1P38352 637 aa5.03□□□□□ -1.6
PRE9YGR135W YIL092WP40497 633 aa5.03□□□□□ -1.6
PRE9YGR135W RRP46P53256 223 aaPredicted RBP5.03□□□□□ -1.6
PRE9YGR135W REC8Q12188 680 aa5.03□□□□□ -1.6
PRE9YGR135W YLR122CQ12312 125 aa5.03□□□□□ -1.6
PRE9YGR135W IML1P47170 1584 aa5.03□□□□□ -1.6
PRE9YGR135W TAF13P11747 167 aa5.02□□□□□ -1.61
PRE9YGR135W INO1P11986 533 aa5.02□□□□□ -1.61
PRE9YGR135W SEC23P15303 768 aaKnown RBP5.02□□□□□ -1.61
PRE9YGR135W MSH3P25336 1018 aa5.02□□□□□ -1.61
PRE9YGR135W MAE1P36013 669 aaKnown RBP5.02□□□□□ -1.61
PRE9YGR135W BET3P36149 193 aa5.02□□□□□ -1.61
PRE9YGR135W ARL1P38116 183 aaKnown RBP5.02□□□□□ -1.61
PRE9YGR135W YAP3P38749 330 aa5.02□□□□□ -1.61
PRE9YGR135W SHU2P38957 223 aa5.02□□□□□ -1.61
PRE9YGR135W CCC2P38995 1004 aa5.02□□□□□ -1.61
PRE9YGR135W DSS1P39112 969 aa5.02□□□□□ -1.61
PRE9YGR135W NEO1P40527 1151 aa5.02□□□□□ -1.61
PRE9YGR135W SAP155P43612 1002 aa5.02□□□□□ -1.61
PRE9YGR135W YJR120WP47157 116 aa5.02□□□□□ -1.61
PRE9YGR135W YJR124CP47159 448 aa5.02□□□□□ -1.61
PRE9YGR135W INP52P50942 1183 aa5.02□□□□□ -1.61
PRE9YGR135W SIW14P53965 281 aa5.02□□□□□ -1.61
PRE9YGR135W ROD1Q02805 837 aa5.02□□□□□ -1.61
PRE9YGR135W GIC2Q06648 383 aa5.02□□□□□ -1.61
PRE9YGR135W THI73Q07904 523 aa5.02□□□□□ -1.61
PRE9YGR135W MED7Q08278 222 aa5.02□□□□□ -1.61
PRE9YGR135W THS1P04801 734 aaKnown RBP5.01□□□□□ -1.61
PRE9YGR135W TOM70P07213 617 aaKnown RBP5.01□□□□□ -1.61
PRE9YGR135W HVG1P0CE11 249 aa5.01□□□□□ -1.61
PRE9YGR135W CHS2P14180 963 aa5.01□□□□□ -1.61
PRE9YGR135W DPB3P27344 201 aa5.01□□□□□ -1.61
PRE9YGR135W AKR1P39010 764 aa5.01□□□□□ -1.61
PRE9YGR135W MBP1P39678 833 aa5.01□□□□□ -1.61
PRE9YGR135W GDH3P39708 457 aa5.01□□□□□ -1.61
PRE9YGR135W BUD27P43573 796 aaKnown RBP RIP-Chip data5.01□□□□□ -1.61not detected
PRE9YGR135W YNR065CP53751 1116 aa5.01□□□□□ -1.61
PRE9YGR135W SND1Q04007 877 aa5.01□□□□□ -1.61
PRE9YGR135W YOR378WQ08902 515 aa5.01□□□□□ -1.61
PRE9YGR135W ELG1Q12050 791 aa5.01□□□□□ -1.61
PRE9YGR135W FAP7Q12055 197 aaPredicted RBP5.01□□□□□ -1.61
PRE9YGR135W GLO4Q12320 285 aa5.01□□□□□ -1.61
PRE9YGR135W KRE5P22023 1365 aa5.01□□□□□ -1.61
PRE9YGR135W QCR6P00127 147 aa5□□□□□ -1.61
PRE9YGR135W DAL5P15365 543 aa5□□□□□ -1.61
PRE9YGR135W PIN4P34217 668 aaKnown RBP RIP-Chip data5□□□□□ -1.61not detected
PRE9YGR135W ERP2P39704 215 aa5□□□□□ -1.61
PRE9YGR135W HXT13P39924 564 aa5□□□□□ -1.61
PRE9YGR135W RTR1P40084 226 aaPredicted RBP5□□□□□ -1.61
PRE9YGR135W FET4P40988 552 aa5□□□□□ -1.61
PRE9YGR135W SDA1P53313 767 aaKnown RBP5□□□□□ -1.61
PRE9YGR135W HXT17P53631 564 aa5□□□□□ -1.61
PRE9YGR135W YNL193WP53870 558 aa5□□□□□ -1.61
PRE9YGR135W HXT15P54854 567 aa5□□□□□ -1.61
PRE9YGR135W UME1Q03010 460 aa5□□□□□ -1.61
PRE9YGR135W TMA64Q04600 565 aaKnown RBP5□□□□□ -1.61
PRE9YGR135W PUF3Q07807 879 aaKnown RBP RIP-Chip data5□□□□□ -1.61not detected
PRE9YGR135W YML133CQ03099 1374 aa5□□□□□ -1.61
PRE9YGR135W YLL067CQ07888 1374 aa5□□□□□ -1.61
PRE9YGR135W YLL066CQ99208 1374 aa5□□□□□ -1.61
PRE9YGR135W RPA135P22138 1203 aaKnown RBP4.99□□□□□ -1.61
PRE9YGR135W VMA4P22203 233 aaKnown RBP4.99□□□□□ -1.61
PRE9YGR135W NPR1P22211 790 aa4.99□□□□□ -1.61
PRE9YGR135W PUF4P25339 888 aaKnown RBP RIP-Chip data4.99□□□□□ -1.61not detected
PRE9YGR135W YKL107WP34251 309 aa4.99□□□□□ -1.61
PRE9YGR135W YKL077WP36081 392 aa4.99□□□□□ -1.61
PRE9YGR135W MCM7P38132 845 aa4.99□□□□□ -1.61
PRE9YGR135W RIM11P38615 370 aa4.99□□□□□ -1.61
PRE9YGR135W YGL176CP46945 554 aa4.99□□□□□ -1.61
PRE9YGR135W MTR4P47047 1073 aaKnown RBP4.99□□□□□ -1.61
PRE9YGR135W HEF3P53978 1044 aaKnown RBP4.99□□□□□ -1.61
PRE9YGR135W NOG1Q02892 647 aaKnown RBP4.99□□□□□ -1.61
PRE9YGR135W HAS1Q03532 505 aaKnown RBP4.99□□□□□ -1.61
PRE9YGR135W ATG16Q03818 150 aa4.99□□□□□ -1.61
PRE9YGR135W THI22Q06490 572 aa4.99□□□□□ -1.61
PRE9YGR135W CMR1Q12510 522 aaKnown RBP4.99□□□□□ -1.61
PRE9YGR135W SNF2P22082 1703 aa4.99□□□□□ -1.61
PRE9YGR135W HEM13P11353 328 aaKnown RBP4.98□□□□□ -1.61
PRE9YGR135W HIR1P32479 840 aa4.98□□□□□ -1.61
PRE9YGR135W YKR073CP36153 106 aa4.98□□□□□ -1.61
PRE9YGR135W ENT3P47160 408 aa4.98□□□□□ -1.61
PRE9YGR135W NCE103P53615 221 aa4.98□□□□□ -1.61
PRE9YGR135W NPL3Q01560 414 aaKnown RBP RIP-Chip data4.98□□□□□ -1.61not detected
PRE9YGR135W TIF35Q04067 274 aaKnown RBP4.98□□□□□ -1.61
PRE9YGR135W EST2Q06163 884 aa4.98□□□□□ -1.61
PRE9YGR135W NOP58Q12499 511 aaKnown RBP4.98□□□□□ -1.61
PRE9YGR135W RKM4Q12504 494 aa4.98□□□□□ -1.61
PRE9YGR135W GLT1Q12680 2145 aaKnown RBP4.98□□□□□ -1.61
PRE9YGR135W HBN1Q96VH4 193 aa4.98□□□□□ -1.61
PRE9YGR135W SIR4P11978 1358 aa4.98□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 35 ms