RNA–Protein interactions for RNA: YPL085W

SEC16, Transcript of COPII vesicle coat protein required for ER transport vesicle budding, yeastyeast

Gene SEC16, Length 6,588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC16YPL085W EST2Q06163 884 aa2.4□□□□□ -2.02
SEC16YPL085W XYL2Q07993 356 aa2.4□□□□□ -2.02
SEC16YPL085W OSH2Q12451 1283 aa2.4□□□□□ -2.02
SEC16YPL085W TEF1P02994 458 aaKnown RBP2.4□□□□□ -2.02
SEC16YPL085W DLD1P32891 587 aa2.4□□□□□ -2.02
SEC16YPL085W YBR062CP38239 180 aa2.4□□□□□ -2.02
SEC16YPL085W RIO2P40160 425 aaKnown RBP2.4□□□□□ -2.02
SEC16YPL085W RPS15Q01855 142 aaKnown RBP2.4□□□□□ -2.02
SEC16YPL085W GRS2Q06817 618 aa2.4□□□□□ -2.02
SEC16YPL085W RTT109Q07794 436 aa2.4□□□□□ -2.02
SEC16YPL085W NOP12Q08208 459 aaKnown RBP2.4□□□□□ -2.02
SEC16YPL085W YOR296WQ08748 1289 aa2.4□□□□□ -2.02
SEC16YPL085W SEM1O94742 89 aa2.4□□□□□ -2.03
SEC16YPL085W CDC6P09119 513 aa2.4□□□□□ -2.03
SEC16YPL085W PFK2P16862 959 aaKnown RBP RIP-Chip data2.4□□□□□ -2.03not detected
SEC16YPL085W MIH1P23748 554 aa2.4□□□□□ -2.03
SEC16YPL085W CDC60P26637 1090 aaKnown RBP2.4□□□□□ -2.03
SEC16YPL085W HSP78P33416 811 aa2.4□□□□□ -2.03
SEC16YPL085W YKL100CP34248 587 aa2.4□□□□□ -2.03
SEC16YPL085W OCT1P35999 772 aa2.4□□□□□ -2.03
SEC16YPL085W NOP4P37838 685 aaKnown RBP2.4□□□□□ -2.03
SEC16YPL085W VAC8P39968 578 aa2.4□□□□□ -2.03
SEC16YPL085W TAF1P46677 1066 aa2.4□□□□□ -2.03
SEC16YPL085W MSB3P48566 633 aaPredicted RBP2.4□□□□□ -2.03
SEC16YPL085W RTA1P53047 317 aa2.4□□□□□ -2.03
SEC16YPL085W ASI1P54074 624 aa2.4□□□□□ -2.03
SEC16YPL085W MMR1Q06324 491 aa2.4□□□□□ -2.03
SEC16YPL085W YKU70P32807 602 aa2.4□□□□□ -2.03
SEC16YPL085W YJL132WP47014 750 aa2.4□□□□□ -2.03
SEC16YPL085W YPL109CQ02981 657 aa2.4□□□□□ -2.03
SEC16YPL085W HEH2Q03281 663 aa2.4□□□□□ -2.03
SEC16YPL085W CWC15Q03772 175 aaKnown RBP2.4□□□□□ -2.03
SEC16YPL085W YCS4Q06156 1176 aa2.4□□□□□ -2.03
SEC16YPL085W SRD1P09007 221 aa2.4□□□□□ -2.03
SEC16YPL085W PHO8P11491 566 aa2.4□□□□□ -2.03
SEC16YPL085W RNR3P21672 869 aaKnown RBP2.4□□□□□ -2.03
SEC16YPL085W PPH22P23595 377 aa2.4□□□□□ -2.03
SEC16YPL085W POL12P38121 705 aaPredicted RBP2.4□□□□□ -2.03
SEC16YPL085W CCT7P42943 550 aaKnown RBP2.4□□□□□ -2.03
SEC16YPL085W RSM26P47141 266 aa2.4□□□□□ -2.03
SEC16YPL085W UBP15P50101 1230 aa2.4□□□□□ -2.03
SEC16YPL085W RPA49Q01080 415 aaPredicted RBP2.4□□□□□ -2.03
SEC16YPL085W SKG3Q06315 1026 aa2.4□□□□□ -2.03
SEC16YPL085W TFB4Q12004 338 aa2.4□□□□□ -2.03
SEC16YPL085W TAF10Q12030 206 aa2.4□□□□□ -2.03
SEC16YPL085W TGL5Q12043 749 aa2.4□□□□□ -2.03
SEC16YPL085W GLE1Q12315 538 aa2.4□□□□□ -2.03
SEC16YPL085W MSH3P25336 1018 aa2.39□□□□□ -2.03
SEC16YPL085W STO1P34160 861 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W MCX1P38323 520 aaPredicted RBP2.39□□□□□ -2.03
SEC16YPL085W VPS29P38759 282 aa2.39□□□□□ -2.03
SEC16YPL085W STT3P39007 718 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W NPP2P39997 493 aa2.39□□□□□ -2.03
SEC16YPL085W FTR1P40088 404 aa2.39□□□□□ -2.03
SEC16YPL085W UBX4P54730 416 aa2.39□□□□□ -2.03
SEC16YPL085W GIR2Q03768 265 aaPredicted RBP2.39□□□□□ -2.03
SEC16YPL085W SPC19Q03954 165 aa2.39□□□□□ -2.03
SEC16YPL085W CSI1Q04368 295 aa2.39□□□□□ -2.03
SEC16YPL085W PYC1P11154 1178 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W KAR3P17119 729 aa2.39□□□□□ -2.03
SEC16YPL085W MNN11P46985 422 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W CEF1Q03654 590 aaPredicted RBP2.39□□□□□ -2.03
SEC16YPL085W FLO11P08640 1367 aa2.39□□□□□ -2.03
SEC16YPL085W YRF1-2P40105 1681 aa2.39□□□□□ -2.03
SEC16YPL085W OM45P16547 393 aa2.39□□□□□ -2.03
SEC16YPL085W COX11P19516 300 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W PAT1P25644 796 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W EUG1P32474 517 aa2.39□□□□□ -2.03
SEC16YPL085W COT1P32798 439 aa2.39□□□□□ -2.03
SEC16YPL085W GCD14P46959 383 aaPredicted RBP2.39□□□□□ -2.03
SEC16YPL085W SRL4Q03085 281 aa2.39□□□□□ -2.03
SEC16YPL085W MCH5Q08777 521 aa2.39□□□□□ -2.03
SEC16YPL085W YOR131CQ12486 218 aa2.39□□□□□ -2.03
SEC16YPL085W SMC6Q12749 1114 aa2.39□□□□□ -2.03
SEC16YPL085W CDC48P25694 835 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W MRPL7P36519 292 aa2.39□□□□□ -2.03
SEC16YPL085W GLO3P38682 493 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W MSR1P38714 643 aa2.39□□□□□ -2.03
SEC16YPL085W YHL041WP38730 149 aa2.39□□□□□ -2.03
SEC16YPL085W YEL025CP39991 1188 aa2.39□□□□□ -2.03
SEC16YPL085W PET130P47065 347 aa2.39□□□□□ -2.03
SEC16YPL085W PUS6P53294 404 aa2.39□□□□□ -2.03
SEC16YPL085W UBP3Q01477 912 aaKnown RBP RIP-Chip data2.39□□□□□ -2.03not detected
SEC16YPL085W SVL3Q03088 825 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W MMT1Q03218 510 aa2.39□□□□□ -2.03
SEC16YPL085W VHS3Q08438 674 aa2.39□□□□□ -2.03
SEC16YPL085W DSE3Q08729 430 aa2.39□□□□□ -2.03
SEC16YPL085W YPR204WQ08995 1032 aa2.39□□□□□ -2.03
SEC16YPL085W PAB1P04147 577 aaKnown RBP RIP-Chip data2.39□□□□□ -2.03not detected
SEC16YPL085W ADE2P21264 571 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W BUD14P27637 709 aa2.39□□□□□ -2.03
SEC16YPL085W CYS3P31373 394 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W ARC19P33204 171 aaKnown RBP2.39□□□□□ -2.03
SEC16YPL085W YKL151CP36059 337 aa2.39□□□□□ -2.03
SEC16YPL085W POA1P38218 177 aa2.39□□□□□ -2.03
SEC16YPL085W DJP1P40564 432 aa2.39□□□□□ -2.03
SEC16YPL085W NPL3Q01560 414 aaKnown RBP RIP-Chip data2.39□□□□□ -2.03 RIP-Chip
SEC16YPL085W ATG16Q03818 150 aa2.39□□□□□ -2.03
SEC16YPL085W NUP192P47054 1683 aa2.39□□□□□ -2.03
SEC16YPL085W CMK1P27466 446 aaKnown RBP2.39□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 7.3 ms