RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 Morc2aQ69ZX6 1030 aa28.64■■■□□ 2.18
Upf3a-201ENSMUST00000043767 Fgd1P52734 960 aa28.63■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Dbr1Q923B1 550 aa28.63■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Bend3Q6PAL0 825 aa28.63■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Zap70P43404 618 aa28.62■■■□□ 2.17
Upf3a-201ENSMUST00000043767 B4galnt3Q6L8S8 986 aa28.62■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Bicc1Q99MQ1 977 aaKnown RBP28.62■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Mphosph10Q810V0 681 aaKnown RBP28.61■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Jmjd4Q8BFT6 427 aa28.6■■■□□ 2.17
Upf3a-201ENSMUST00000043767 EspnQ9ET47 871 aa28.59■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Fbxo41Q6NS60 873 aa28.58■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Mylk2Q8VCR8 613 aa28.58■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Chmp5Q9D7S9 219 aa28.58■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Nkx1-2P42580 305 aa28.58■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Gm12185Q5NCB2 835 aa28.58■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Taok3Q8BYC6 898 aa28.58■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Trim52Q8CDV4 233 aa28.58■■■□□ 2.17
Upf3a-201ENSMUST00000043767 Nav1Q8CH77 1875 aa28.57■■■□□ 2.16
Upf3a-201ENSMUST00000043767 ChgaP26339 463 aaKnown RBP28.57■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Tm6sf1P58749 370 aa28.57■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Map3k13Q1HKZ5 959 aa28.57■■■□□ 2.16
Upf3a-201ENSMUST00000043767 4930523C07RikE9Q2T4 99 aa28.56■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Klc3Q91W40 508 aa28.56■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Cfdp1O88271 295 aaKnown RBP28.55■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Ppm1mQ8BU27 406 aa28.55■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Gnai2P08752 355 aaKnown RBP28.53■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Ankle2Q6P1H6 964 aa28.53■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Erbb4Q61527 1308 aa28.53■■■□□ 2.16
Upf3a-201ENSMUST00000043767 Trim27Q62158 513 aa28.51■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Lrit1Q8K099 624 aa28.51■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Rps6ka4Q9Z2B9 773 aa28.51■■■□□ 2.15
Upf3a-201ENSMUST00000043767 MypnQ5DTJ9 1315 aa28.51■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Ubap1lG3UW59 384 aa28.5■■■□□ 2.15
Upf3a-201ENSMUST00000043767 HellsQ60848 821 aa28.5■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Ppfibp2O35711 882 aa28.5■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Fam13aQ8BGI4 693 aa28.5■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Stk36Q69ZM6 1316 aa28.49■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Pde4dQ01063 747 aa28.49■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Nip7Q9CXK8 180 aaKnown RBP28.49■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Tlr7P58681 1050 aa28.48■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Abca3Q8R420 1704 aa28.48■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Hs1bp3Q3TC93 395 aa28.47■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Cers3Q1A3B0 383 aa28.47■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Zbtb1Q91VL9 713 aa28.47■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Gigyf1Q99MR1 1044 aaKnown RBP28.47■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Lmbr1lQ9D1E5 489 aa28.47■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Zbtb40Q6PCS8 1258 aa28.46■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Atl3Q91YH5 541 aa28.46■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Miga2Q8BK03 593 aa28.46■■■□□ 2.15
Upf3a-201ENSMUST00000043767 Zcrb1Q9CZ96 217 aaKnown RBP28.46■■■□□ 2.15
Upf3a-201ENSMUST00000043767 PrkcshO08795 521 aa28.44■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Bicdl1A0JNT9 577 aa28.44■■■□□ 2.14
Upf3a-201ENSMUST00000043767 SkilQ60665 675 aa28.44■■■□□ 2.14
Upf3a-201ENSMUST00000043767 HnrnpuQ8VEK3 800 aaKnown RBP28.44■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Kndc1Q0KK55 1742 aa28.44■■■□□ 2.14
Upf3a-201ENSMUST00000043767 MetP16056 1379 aa28.43■■■□□ 2.14
Upf3a-201ENSMUST00000043767 CanxP35564 591 aaKnown RBP28.43■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Srgap3Q812A2 1099 aa28.42■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Ppp1r42Q8R1Z4 357 aa28.42■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Ddx60E9PZQ1 1711 aa28.42■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Slfnl1Q8BHW9 410 aa28.42■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Pnmal2G3X9N3 661 aa28.41■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Grm8P47743 908 aa28.41■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Cwc27Q3TKY6 469 aa28.41■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Atp8b2P98199 1209 aa28.41■■■□□ 2.14
Upf3a-201ENSMUST00000043767 NmiO35309 314 aa28.4■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Ppm1gQ61074 542 aa28.4■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Afg3l2Q8JZQ2 802 aaKnown RBP28.4■■■□□ 2.14
Upf3a-201ENSMUST00000043767 Wwc1Q5SXA9 1104 aa28.39■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Adam1aQ60813 791 aa28.39■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Fkbp5Q64378 456 aa28.39■■■□□ 2.13
Upf3a-201ENSMUST00000043767 CarsQ9ER72 831 aaKnown RBP28.39■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Sos2Q02384 1333 aa28.39■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Mre11Q61216 706 aa28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Ddx58Q6Q899 926 aa28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Ripor2Q80U16 1078 aa28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Sugp2Q8CH09 1067 aa28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Eif3aP23116 1344 aaKnown RBP28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Arhgap33Q80YF9 1305 aa28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Dnai1Q8C0M8 701 aa28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Tmc1Q8R4P5 757 aa28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Ltb4r2Q9JJL9 360 aa28.38■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Tgfb1i1Q62219 461 aa28.37■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Ier5O89113 308 aa28.36■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Soga3Q6NZL0 945 aa28.36■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Q8BT18 775 aa28.36■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Kiaa0319lQ8K135 1048 aa28.36■■■□□ 2.13
Upf3a-201ENSMUST00000043767 FanclQ9CR14 375 aa28.36■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Sipa1l3G3X9J0 1776 aa28.35■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Ank1Q02357 1862 aa28.35■■■□□ 2.13
Upf3a-201ENSMUST00000043767 AK157302I3ITR1 129 aa28.34■■■□□ 2.13
Upf3a-201ENSMUST00000043767 LifrP42703 1092 aa28.34■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Smarca5Q91ZW3 1051 aaKnown RBP28.34■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Isca1Q9D924 129 aa28.34■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Ankib1Q6ZPS6 1085 aa28.33■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Sart3Q9JLI8 962 aaKnown RBP28.33■■■□□ 2.13
Upf3a-201ENSMUST00000043767 Mmp8O70138 465 aa28.32■■■□□ 2.12
Upf3a-201ENSMUST00000043767 GalcP54818 684 aa28.32■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Eif4g2Q62448 906 aaKnown RBP28.32■■■□□ 2.12
Upf3a-201ENSMUST00000043767 Ppp6r1Q7TSI3 856 aa28.32■■■□□ 2.12
Retrieved 100 of 22,080 RNA–protein pairs in 16.6 ms