Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Gm25239-201ENSMUST00000174915 86 ntBASIC48.12■■■■■ 5.29
Ddx58Q6Q899 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC44.44■■■■■ 4.7
Ddx58Q6Q899 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC43.85■■■■■ 4.61
Ddx58Q6Q899 Gm15042-201ENSMUST00000120212 883 ntBASIC42.17■■■■■ 4.34
Ddx58Q6Q899 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC41.79■■■■■ 4.28
Ddx58Q6Q899 Gm24109-201ENSMUST00000175489 103 ntBASIC41.65■■■■■ 4.26
Ddx58Q6Q899 Gm15045-201ENSMUST00000117359 883 ntBASIC41.27■■■■■ 4.2
Ddx58Q6Q899 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC41.04■■■■■ 4.16
Ddx58Q6Q899 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC40.86■■■■■ 4.13
Ddx58Q6Q899 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC40.63■■■■■ 4.09
Ddx58Q6Q899 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC40.48■■■■■ 4.07
Ddx58Q6Q899 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC40.36■■■■■ 4.05
Ddx58Q6Q899 Gm23366-201ENSMUST00000175022 89 ntBASIC40.22■■■■■ 4.03
Ddx58Q6Q899 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
Ddx58Q6Q899 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
Ddx58Q6Q899 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
Ddx58Q6Q899 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC39.23■■■■□ 3.87
Ddx58Q6Q899 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC39.05■■■■□ 3.84
Ddx58Q6Q899 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC38.94■■■■□ 3.82
Ddx58Q6Q899 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC38.89■■■■□ 3.82
Ddx58Q6Q899 AC153911.1-202ENSMUST00000218534 1034 ntBASIC38.77■■■■□ 3.8
Ddx58Q6Q899 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC38.68■■■■□ 3.78
Ddx58Q6Q899 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC38.6■■■■□ 3.77
Ddx58Q6Q899 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
Ddx58Q6Q899 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC38.56■■■■□ 3.76
Ddx58Q6Q899 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC38.55■■■■□ 3.76
Ddx58Q6Q899 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC38.52■■■■□ 3.76
Ddx58Q6Q899 Psd-208ENSMUST00000224556 2034 ntBASIC38.48■■■■□ 3.75
Ddx58Q6Q899 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC38.41■■■■□ 3.74
Ddx58Q6Q899 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC38.34■■■■□ 3.73
Ddx58Q6Q899 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
Ddx58Q6Q899 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC38.15■■■■□ 3.7
Ddx58Q6Q899 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC38.11■■■■□ 3.69
Ddx58Q6Q899 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC38.1■■■■□ 3.69
Ddx58Q6Q899 Gm25238-201ENSMUST00000174914 89 ntBASIC37.95■■■■□ 3.67
Ddx58Q6Q899 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC37.92■■■■□ 3.66
Ddx58Q6Q899 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC37.73■■■■□ 3.63
Ddx58Q6Q899 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC37.67■■■■□ 3.62
Ddx58Q6Q899 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC37.52■■■■□ 3.6
Ddx58Q6Q899 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC37.38■■■■□ 3.57
Ddx58Q6Q899 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC37.38■■■■□ 3.57
Ddx58Q6Q899 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC37.26■■■■□ 3.56
Ddx58Q6Q899 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC37.25■■■■□ 3.55
Ddx58Q6Q899 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC37.11■■■■□ 3.53
Ddx58Q6Q899 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC37.06■■■■□ 3.52
Ddx58Q6Q899 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
Ddx58Q6Q899 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
Ddx58Q6Q899 Gm27325-201ENSMUST00000175467 74 ntBASIC37.01■■■■□ 3.52
Ddx58Q6Q899 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
Ddx58Q6Q899 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC36.84■■■■□ 3.49
Ddx58Q6Q899 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC36.84■■■■□ 3.49
Ddx58Q6Q899 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC36.73■■■■□ 3.47
Ddx58Q6Q899 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC36.71■■■■□ 3.47
Ddx58Q6Q899 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
Ddx58Q6Q899 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC36.65■■■■□ 3.46
Ddx58Q6Q899 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC36.53■■■■□ 3.44
Ddx58Q6Q899 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
Ddx58Q6Q899 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC36.41■■■■□ 3.42
Ddx58Q6Q899 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC36.39■■■■□ 3.42
Ddx58Q6Q899 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
Ddx58Q6Q899 Gm25262-201ENSMUST00000174934 133 ntBASIC36.29■■■■□ 3.4
Ddx58Q6Q899 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC36.26■■■■□ 3.4
Ddx58Q6Q899 Rab21-202ENSMUST00000218831 843 ntBASIC36.25■■■■□ 3.39
Ddx58Q6Q899 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
Ddx58Q6Q899 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
Ddx58Q6Q899 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC36.14■■■■□ 3.38
Ddx58Q6Q899 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC36.12■■■■□ 3.37
Ddx58Q6Q899 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC36.08■■■■□ 3.37
Ddx58Q6Q899 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
Ddx58Q6Q899 Gm10524-201ENSMUST00000181931 1893 ntBASIC36.05■■■■□ 3.36
Ddx58Q6Q899 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC36.05■■■■□ 3.36
Ddx58Q6Q899 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC35.98■■■■□ 3.35
Ddx58Q6Q899 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC35.94■■■■□ 3.34
Ddx58Q6Q899 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC35.92■■■■□ 3.34
Ddx58Q6Q899 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
Ddx58Q6Q899 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
Ddx58Q6Q899 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC35.89■■■■□ 3.34
Ddx58Q6Q899 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
Ddx58Q6Q899 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC35.84■■■■□ 3.33
Ddx58Q6Q899 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC35.73■■■■□ 3.31
Ddx58Q6Q899 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC35.73■■■■□ 3.31
Ddx58Q6Q899 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
Ddx58Q6Q899 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC35.67■■■■□ 3.3
Ddx58Q6Q899 CT025624.2-201ENSMUST00000223609 1909 ntBASIC35.67■■■■□ 3.3
Ddx58Q6Q899 Gm42596-201ENSMUST00000196305 1958 ntBASIC35.6■■■■□ 3.29
Ddx58Q6Q899 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC35.57■■■■□ 3.29
Ddx58Q6Q899 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
Ddx58Q6Q899 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC35.55■■■■□ 3.28
Ddx58Q6Q899 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC35.54■■■■□ 3.28
Ddx58Q6Q899 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
Ddx58Q6Q899 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
Ddx58Q6Q899 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
Ddx58Q6Q899 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC35.42■■■■□ 3.26
Ddx58Q6Q899 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC35.38■■■■□ 3.25
Ddx58Q6Q899 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
Ddx58Q6Q899 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC35.35■■■■□ 3.25
Ddx58Q6Q899 Gm26115-201ENSMUST00000175605 87 ntBASIC35.33■■■■□ 3.25
Ddx58Q6Q899 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
Ddx58Q6Q899 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC35.26■■■■□ 3.24
Ddx58Q6Q899 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC35.25■■■■□ 3.23
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms