RNA–Protein interactions for RNA: ENST00000494255.5

TRA2A-209, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 1,653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-209ENST00000494255 NISCHQ9Y2I1 1504 aa29.92■■■□□ 2.38
TRA2A-209ENST00000494255 CCDC180Q9P1Z9 1646 aa26.56■■□□□ 1.84
TRA2A-209ENST00000494255 ABCC9O60706 1549 aa25.81■■□□□ 1.72
TRA2A-209ENST00000494255 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
TRA2A-209ENST00000494255 ZCCHC6Q5VYS8 1495 aaKnown RBP24.96■■□□□ 1.59
TRA2A-209ENST00000494255 RB1CC1Q8TDY2 1594 aa24.93■■□□□ 1.58
TRA2A-209ENST00000494255 NACADO15069 1562 aa24.92■■□□□ 1.58
TRA2A-209ENST00000494255 MYO15BQ96JP2 1530 aa24.81■■□□□ 1.56
TRA2A-209ENST00000494255 DCAF1Q9Y4B6 1507 aa24.76■■□□□ 1.55
TRA2A-209ENST00000494255 UNC13AQ9UPW8 1703 aa24.34■■□□□ 1.49
TRA2A-209ENST00000494255 SCRIBQ14160 1630 aa24.24■■□□□ 1.47
TRA2A-209ENST00000494255 PABPN1Q86U42 306 aaKnown RBP eCLIP24.15■■□□□ 1.46
TRA2A-209ENST00000494255 BICRAQ9NZM4 1560 aa24.12■■□□□ 1.45
TRA2A-209ENST00000494255 SHROOM4Q9ULL8 1493 aa23.92■■□□□ 1.42
TRA2A-209ENST00000494255 DNAJC5BQ9UF47 199 aa23.49■■□□□ 1.35
TRA2A-209ENST00000494255 EIF4G1Q04637 1599 aaKnown RBP23.48■■□□□ 1.35
TRA2A-209ENST00000494255 CC2D2AQ9P2K1 1620 aa23.36■■□□□ 1.33
TRA2A-209ENST00000494255 CECR2Q9BXF3 1484 aa23.27■■□□□ 1.32
TRA2A-209ENST00000494255 BAZ1AQ9NRL2 1556 aaPredicted RBP23.2■■□□□ 1.3
TRA2A-209ENST00000494255 SMARCA4P51532 1647 aa23.2■■□□□ 1.3
TRA2A-209ENST00000494255 MROH2BQ7Z745 1585 aa23.06■■□□□ 1.28
TRA2A-209ENST00000494255 SMARCA2P51531 1590 aa23.03■■□□□ 1.28
TRA2A-209ENST00000494255 ATAD2BQ9ULI0 1458 aa23.01■■□□□ 1.27
TRA2A-209ENST00000494255 NCAPD3P42695 1498 aa22.97■■□□□ 1.27
TRA2A-209ENST00000494255 PEG3Q9GZU2 1588 aa22.94■■□□□ 1.26
TRA2A-209ENST00000494255 HMGXB3Q12766 1538 aa22.9■■□□□ 1.26
TRA2A-209ENST00000494255 BAZ1BQ9UIG0 1483 aaKnown RBP22.86■■□□□ 1.25
TRA2A-209ENST00000494255 RSF1Q96T23 1441 aaPredicted RBP22.85■■□□□ 1.25
TRA2A-209ENST00000494255 WIZO95785 1651 aa22.83■■□□□ 1.25
TRA2A-209ENST00000494255 TOP2AP11388 1531 aaKnown RBP22.61■■□□□ 1.21
TRA2A-209ENST00000494255 SUPT5HO00267 1087 aaKnown RBP22.43■■□□□ 1.18
TRA2A-209ENST00000494255 NESP48681 1621 aa22.37■■□□□ 1.17
TRA2A-209ENST00000494255 LAMC3Q9Y6N6 1575 aa22.37■■□□□ 1.17
TRA2A-209ENST00000494255 CADPSQ9ULU8 1353 aa22.33■■□□□ 1.16
TRA2A-209ENST00000494255 CCDC88BA6NC98 1476 aa22.32■■□□□ 1.16
TRA2A-209ENST00000494255 ERCC6Q03468 1493 aa22.27■■□□□ 1.16
TRA2A-209ENST00000494255 PDS5BQ9NTI5 1447 aa22.22■■□□□ 1.15
TRA2A-209ENST00000494255 CFTRP13569 1480 aa22.21■■□□□ 1.15
TRA2A-209ENST00000494255 KIF21AQ7Z4S6 1674 aa22.13■■□□□ 1.13
TRA2A-209ENST00000494255 PRDM2Q13029 1718 aa22.11■■□□□ 1.13
TRA2A-209ENST00000494255 FANCD2Q9BXW9 1451 aa22.08■■□□□ 1.12
TRA2A-209ENST00000494255 CEP164Q9UPV0 1460 aa22.06■■□□□ 1.12
TRA2A-209ENST00000494255 THOC2Q8NI27 1593 aaKnown RBP22■■□□□ 1.11
TRA2A-209ENST00000494255 MRC2Q9UBG0 1479 aa21.98■■□□□ 1.11
TRA2A-209ENST00000494255 CUX2O14529 1486 aa21.96■■□□□ 1.11
TRA2A-209ENST00000494255 WDR62O43379 1518 aa21.88■■□□□ 1.09
TRA2A-209ENST00000494255 URB2Q14146 1524 aaKnown RBP21.83■■□□□ 1.08
TRA2A-209ENST00000494255 ABCC8Q09428 1581 aa21.77■■□□□ 1.08
TRA2A-209ENST00000494255 DNMBPQ6XZF7 1577 aa21.74■■□□□ 1.07
TRA2A-209ENST00000494255 TOPBP1Q92547 1522 aa21.74■■□□□ 1.07
TRA2A-209ENST00000494255 CUX1P39880 1505 aa21.63■■□□□ 1.05
TRA2A-209ENST00000494255 IFT140Q96RY7 1462 aa21.58■■□□□ 1.04
TRA2A-209ENST00000494255 WRNQ14191 1432 aaPredicted RBP eCLIP21.57■■□□□ 1.04
TRA2A-209ENST00000494255 POLA1P09884 1462 aaPredicted RBP21.56■■□□□ 1.04
TRA2A-209ENST00000494255 FGD5Q6ZNL6 1462 aa21.54■■□□□ 1.04
TRA2A-209ENST00000494255 TOP2BQ02880 1626 aa21.49■■□□□ 1.03
TRA2A-209ENST00000494255 BIVM-ERCC5R4GMW8 1640 aa21.49■■□□□ 1.03
TRA2A-209ENST00000494255 SOGA1O94964 1423 aa21.49■■□□□ 1.03
TRA2A-209ENST00000494255 SYNJ1O43426 1573 aa21.48■■□□□ 1.03
TRA2A-209ENST00000494255 TARBP1Q13395 1621 aaKnown RBP21.47■■□□□ 1.03
TRA2A-209ENST00000494255 RAD54L2Q9Y4B4 1467 aa21.46■■□□□ 1.03
TRA2A-209ENST00000494255 ZNF608Q9ULD9 1512 aaPredicted RBP21.43■■□□□ 1.02
TRA2A-209ENST00000494255 EIF4G3O43432 1585 aaKnown RBP21.38■■□□□ 1.01
TRA2A-209ENST00000494255 WDR97A6NE52 1622 aa21.35■■□□□ 1.01
TRA2A-209ENST00000494255 AQRO60306 1485 aaKnown RBP eCLIP21.34■■□□□ 1.013e-7■■□□□ 11.9
TRA2A-209ENST00000494255 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
TRA2A-209ENST00000494255 ABCA10Q8WWZ4 1543 aa21.33■■□□□ 1.01
TRA2A-209ENST00000494255 GAPVD1Q14C86 1478 aa21.25■□□□□ 0.99
TRA2A-209ENST00000494255 ABCA5Q8WWZ7 1642 aa21.23■□□□□ 0.99
TRA2A-209ENST00000494255 GRIN2BQ13224 1484 aa21.23■□□□□ 0.99
TRA2A-209ENST00000494255 PBRM1Q86U86 1689 aa21.2■□□□□ 0.98
TRA2A-209ENST00000494255 TRIM41Q8WV44 630 aa21.18■□□□□ 0.98
TRA2A-209ENST00000494255 SNAPC4Q5SXM2 1469 aa21.17■□□□□ 0.98
TRA2A-209ENST00000494255 MAGI1Q96QZ7 1491 aaPredicted RBP21.15■□□□□ 0.98
TRA2A-209ENST00000494255 KIF27Q86VH2 1401 aa21.11■□□□□ 0.97
TRA2A-209ENST00000494255 FBLN2P98095 1184 aa21.1■□□□□ 0.97
TRA2A-209ENST00000494255 CHD1O14646 1710 aa21.09■□□□□ 0.97
TRA2A-209ENST00000494255 ERICH3Q5RHP9 1530 aa21.09■□□□□ 0.97
TRA2A-209ENST00000494255 OSCARQ8IYS5 282 aa21.09■□□□□ 0.97
TRA2A-209ENST00000494255 DNAJC5Q9H3Z4 198 aa21.07■□□□□ 0.96
TRA2A-209ENST00000494255 CHMP7Q8WUX9 453 aaPredicted RBP21.06■□□□□ 0.96
TRA2A-209ENST00000494255 SYNJ2O15056 1496 aa21.06■□□□□ 0.96
TRA2A-209ENST00000494255 ADAMTS12P58397 1594 aa21.03■□□□□ 0.96
TRA2A-209ENST00000494255 FHAD1B1AJZ9 1412 aa21■□□□□ 0.95
TRA2A-209ENST00000494255 CHIC1Q5VXU3 224 aa21■□□□□ 0.95
TRA2A-209ENST00000494255 IGF1RP08069 1367 aa20.97■□□□□ 0.95
TRA2A-209ENST00000494255 CUL7Q14999 1698 aa20.95■□□□□ 0.94
TRA2A-209ENST00000494255 GRIN2AQ12879 1464 aa20.94■□□□□ 0.94
TRA2A-209ENST00000494255 RUSC2Q8N2Y8 1516 aa20.93■□□□□ 0.94
TRA2A-209ENST00000494255 CARMIL1Q5VZK9 1371 aa20.88■□□□□ 0.93
TRA2A-209ENST00000494255 CLASP1Q7Z460 1538 aa20.84■□□□□ 0.93
TRA2A-209ENST00000494255 NUP160Q12769 1436 aa20.83■□□□□ 0.92
TRA2A-209ENST00000494255 EEA1Q15075 1411 aa20.83■□□□□ 0.92
TRA2A-209ENST00000494255 CEP170Q5SW79 1584 aa20.82■□□□□ 0.92
TRA2A-209ENST00000494255 RAPGEF2Q9Y4G8 1499 aa20.78■□□□□ 0.92
TRA2A-209ENST00000494255 CSRNP3Q8WYN3 585 aa20.76■□□□□ 0.91
TRA2A-209ENST00000494255 FAM9AQ8IZU1 332 aaPredicted RBP20.74■□□□□ 0.91
TRA2A-209ENST00000494255 ARHGEF11O15085 1522 aa20.72■□□□□ 0.91
TRA2A-209ENST00000494255 RIMBP3CA6NJZ7 1639 aa20.72■□□□□ 0.91
TRA2A-209ENST00000494255 RIMBP3BA6NNM3 1639 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms