RNA–Protein interactions for RNA: ENST00000621813.4

TRA2A-212, Transcript of transformer 2 alpha homolog, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TRA2A, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-212ENST00000621813 NISCHQ9Y2I1 1504 aa37.53■■■■□ 3.6
TRA2A-212ENST00000621813 CCDC180Q9P1Z9 1646 aa32.46■■■□□ 2.79
TRA2A-212ENST00000621813 ZCCHC6Q5VYS8 1495 aaKnown RBP31.68■■■□□ 2.66
TRA2A-212ENST00000621813 SHROOM4Q9ULL8 1493 aa31.08■■■□□ 2.57
TRA2A-212ENST00000621813 DCAF1Q9Y4B6 1507 aa31.07■■■□□ 2.56
TRA2A-212ENST00000621813 DCAF8L2P0C7V8 631 aa30.73■■■□□ 2.51
TRA2A-212ENST00000621813 MYO15BQ96JP2 1530 aa30.43■■■□□ 2.46
TRA2A-212ENST00000621813 SUPT5HO00267 1087 aaKnown RBP30.26■■■□□ 2.44
TRA2A-212ENST00000621813 ABCC9O60706 1549 aa30.16■■■□□ 2.42
TRA2A-212ENST00000621813 NACADO15069 1562 aa30.03■■■□□ 2.4
TRA2A-212ENST00000621813 SCRIBQ14160 1630 aa29.91■■■□□ 2.38
TRA2A-212ENST00000621813 PELP1Q8IZL8 1130 aaKnown RBP29.79■■■□□ 2.36
TRA2A-212ENST00000621813 RB1CC1Q8TDY2 1594 aa29.61■■■□□ 2.33
TRA2A-212ENST00000621813 RSF1Q96T23 1441 aaPredicted RBP29.37■■■□□ 2.29
TRA2A-212ENST00000621813 CHIC1Q5VXU3 224 aa29.35■■■□□ 2.29
TRA2A-212ENST00000621813 MYT1Q01538 1121 aa29.2■■■□□ 2.26
TRA2A-212ENST00000621813 UNC13AQ9UPW8 1703 aa29.09■■■□□ 2.25
TRA2A-212ENST00000621813 CECR2Q9BXF3 1484 aa29.07■■■□□ 2.24
TRA2A-212ENST00000621813 MROH2BQ7Z745 1585 aa29.01■■■□□ 2.23
TRA2A-212ENST00000621813 BAZ1AQ9NRL2 1556 aaPredicted RBP28.95■■■□□ 2.23
TRA2A-212ENST00000621813 WIZO95785 1651 aa28.85■■■□□ 2.21
TRA2A-212ENST00000621813 SMARCA4P51532 1647 aa28.73■■■□□ 2.19
TRA2A-212ENST00000621813 BICRAQ9NZM4 1560 aa28.67■■■□□ 2.18
TRA2A-212ENST00000621813 HRCP23327 699 aa28.64■■■□□ 2.18
TRA2A-212ENST00000621813 TOP2AP11388 1531 aaKnown RBP28.56■■■□□ 2.16
TRA2A-212ENST00000621813 TRIM41Q8WV44 630 aa28.43■■■□□ 2.14
TRA2A-212ENST00000621813 EIF4G1Q04637 1599 aaKnown RBP28.38■■■□□ 2.13
TRA2A-212ENST00000621813 PABPN1Q86U42 306 aaKnown RBP eCLIP28.37■■■□□ 2.13
TRA2A-212ENST00000621813 PEG3Q9GZU2 1588 aa28.35■■■□□ 2.13
TRA2A-212ENST00000621813 SMARCA2P51531 1590 aa28.31■■■□□ 2.12
TRA2A-212ENST00000621813 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
TRA2A-212ENST00000621813 LOC105371045A0A1W2PR82 267 aa28.23■■■□□ 2.11
TRA2A-212ENST00000621813 ATAD2BQ9ULI0 1458 aa28.04■■■□□ 2.08
TRA2A-212ENST00000621813 BAZ1BQ9UIG0 1483 aaKnown RBP27.95■■■□□ 2.07
TRA2A-212ENST00000621813 ABCC8Q09428 1581 aa27.9■■■□□ 2.06
TRA2A-212ENST00000621813 FAM9AQ8IZU1 332 aaPredicted RBP27.89■■■□□ 2.06
TRA2A-212ENST00000621813 TTBK1Q5TCY1 1321 aaPredicted RBP27.85■■■□□ 2.05
TRA2A-212ENST00000621813 HMGXB3Q12766 1538 aa27.74■■■□□ 2.03
TRA2A-212ENST00000621813 PCGF6Q9BYE7 350 aa27.74■■■□□ 2.03
TRA2A-212ENST00000621813 NCAPD3P42695 1498 aa27.68■■■□□ 2.02
TRA2A-212ENST00000621813 EEA1Q15075 1411 aa27.67■■■□□ 2.02
TRA2A-212ENST00000621813 WRNQ14191 1432 aaPredicted RBP eCLIP27.65■■■□□ 2.02
TRA2A-212ENST00000621813 TRIM26Q12899 539 aaPredicted RBP27.59■■■□□ 2.01
TRA2A-212ENST00000621813 SYNJ1O43426 1573 aa27.51■■□□□ 1.99
TRA2A-212ENST00000621813 SOGA1O94964 1423 aa27.5■■□□□ 1.99
TRA2A-212ENST00000621813 SCAF1Q9H7N4 1312 aaKnown RBP27.46■■□□□ 1.99
TRA2A-212ENST00000621813 EHMT2Q96KQ7 1210 aa27.45■■□□□ 1.99
TRA2A-212ENST00000621813 PPARGC1BQ86YN6 1023 aaKnown RBP27.41■■□□□ 1.98
TRA2A-212ENST00000621813 CSRNP3Q8WYN3 585 aa27.39■■□□□ 1.97
TRA2A-212ENST00000621813 TOP2BQ02880 1626 aa27.37■■□□□ 1.97
TRA2A-212ENST00000621813 BIVM-ERCC5R4GMW8 1640 aa27.35■■□□□ 1.97
TRA2A-212ENST00000621813 RUSC2Q8N2Y8 1516 aa27.34■■□□□ 1.97
TRA2A-212ENST00000621813 TNIKQ9UKE5 1360 aa27.34■■□□□ 1.97
TRA2A-212ENST00000621813 CC2D2AQ9P2K1 1620 aa27.31■■□□□ 1.96
TRA2A-212ENST00000621813 GOLGA3Q08378 1498 aa27.3■■□□□ 1.96
TRA2A-212ENST00000621813 PRDM2Q13029 1718 aa27.29■■□□□ 1.96
TRA2A-212ENST00000621813 KIF21BO75037 1637 aa27.28■■□□□ 1.96
TRA2A-212ENST00000621813 CFTRP13569 1480 aa27.28■■□□□ 1.96
TRA2A-212ENST00000621813 CEP162Q5TB80 1403 aa27.24■■□□□ 1.95
TRA2A-212ENST00000621813 CEP164Q9UPV0 1460 aa27.23■■□□□ 1.95
TRA2A-212ENST00000621813 UBTFP17480 764 aaKnown RBP27.11■■□□□ 1.93
TRA2A-212ENST00000621813 CUX1P39880 1505 aa27.09■■□□□ 1.93
TRA2A-212ENST00000621813 CADPSQ9ULU8 1353 aa27.02■■□□□ 1.92
TRA2A-212ENST00000621813 ERICH3Q5RHP9 1530 aa26.96■■□□□ 1.91
TRA2A-212ENST00000621813 RAPGEF2Q9Y4G8 1499 aa26.93■■□□□ 1.9
TRA2A-212ENST00000621813 ZEB1P37275 1124 aaPredicted RBP26.9■■□□□ 1.9
TRA2A-212ENST00000621813 DNAJC5BQ9UF47 199 aa26.9■■□□□ 1.9
TRA2A-212ENST00000621813 KIF27Q86VH2 1401 aa26.89■■□□□ 1.9
TRA2A-212ENST00000621813 PRXQ9BXM0 1461 aa26.88■■□□□ 1.89
TRA2A-212ENST00000621813 CLIP1P30622 1438 aa26.86■■□□□ 1.89
TRA2A-212ENST00000621813 VPS8Q8N3P4 1428 aa26.75■■□□□ 1.87
TRA2A-212ENST00000621813 FANCD2Q9BXW9 1451 aa26.74■■□□□ 1.87
TRA2A-212ENST00000621813 FGD5Q6ZNL6 1462 aa26.69■■□□□ 1.86
TRA2A-212ENST00000621813 ACIN1Q9UKV3 1341 aaKnown RBP26.68■■□□□ 1.86
TRA2A-212ENST00000621813 LAMC3Q9Y6N6 1575 aa26.67■■□□□ 1.86
TRA2A-212ENST00000621813 DNMBPQ6XZF7 1577 aa26.66■■□□□ 1.86
TRA2A-212ENST00000621813 CUX2O14529 1486 aa26.65■■□□□ 1.86
TRA2A-212ENST00000621813 IGF1RP08069 1367 aa26.54■■□□□ 1.84
TRA2A-212ENST00000621813 NESP48681 1621 aa26.53■■□□□ 1.84
TRA2A-212ENST00000621813 TOPBP1Q92547 1522 aa26.53■■□□□ 1.84
TRA2A-212ENST00000621813 APLP2Q06481 763 aa26.52■■□□□ 1.84
TRA2A-212ENST00000621813 ARAP1Q96P48 1450 aa26.5■■□□□ 1.83
TRA2A-212ENST00000621813 ABCA10Q8WWZ4 1543 aa26.48■■□□□ 1.83
TRA2A-212ENST00000621813 CENPBP07199 599 aaPredicted RBP26.47■■□□□ 1.83
TRA2A-212ENST00000621813 POLA1P09884 1462 aaPredicted RBP26.45■■□□□ 1.82
TRA2A-212ENST00000621813 CARMIL1Q5VZK9 1371 aa26.44■■□□□ 1.82
TRA2A-212ENST00000621813 PDS5BQ9NTI5 1447 aa26.42■■□□□ 1.82
TRA2A-212ENST00000621813 RANGAP1P46060 587 aaPredicted RBP26.41■■□□□ 1.82
TRA2A-212ENST00000621813 BCL11AQ9H165 835 aa26.38■■□□□ 1.81
TRA2A-212ENST00000621813 CCER1Q8TC90 406 aaPredicted RBP26.37■■□□□ 1.81
TRA2A-212ENST00000621813 ARHGAP35Q9NRY4 1499 aa26.37■■□□□ 1.81
TRA2A-212ENST00000621813 CUL7Q14999 1698 aa26.37■■□□□ 1.81
TRA2A-212ENST00000621813 WDR97A6NE52 1622 aa26.36■■□□□ 1.81
TRA2A-212ENST00000621813 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.35■■□□□ 1.81
TRA2A-212ENST00000621813 URB2Q14146 1524 aaKnown RBP26.35■■□□□ 1.81
TRA2A-212ENST00000621813 RAD54L2Q9Y4B4 1467 aa26.35■■□□□ 1.81
TRA2A-212ENST00000621813 GTF3C3Q9Y5Q9 886 aa26.31■■□□□ 1.8
TRA2A-212ENST00000621813 NEUROD1Q13562 356 aa26.29■■□□□ 1.8
TRA2A-212ENST00000621813 KIF21AQ7Z4S6 1674 aa26.29■■□□□ 1.8
TRA2A-212ENST00000621813 ABCA5Q8WWZ7 1642 aa26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms