Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LSM1O15116 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LSM1O15116 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.34■□□□□ 0.53
LSM1O15116 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.34■□□□□ 0.53
LSM1O15116 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.34■□□□□ 0.53
LSM1O15116 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.34■□□□□ 0.53
LSM1O15116 PRKY-204ENST00000533551 1019 ntBASIC18.34■□□□□ 0.53
LSM1O15116 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.34■□□□□ 0.53
LSM1O15116 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.34■□□□□ 0.53
LSM1O15116 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 AC008403.3-201ENST00000598924 454 ntBASIC18.34■□□□□ 0.53
LSM1O15116 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.34■□□□□ 0.53
LSM1O15116 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.34■□□□□ 0.53
LSM1O15116 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.34■□□□□ 0.53
LSM1O15116 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
LSM1O15116 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM1O15116 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.33■□□□□ 0.53
LSM1O15116 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM1O15116 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM1O15116 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM1O15116 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.33■□□□□ 0.53
LSM1O15116 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LSM1O15116 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.33■□□□□ 0.53
LSM1O15116 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM1O15116 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM1O15116 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LSM1O15116 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.33■□□□□ 0.52
LSM1O15116 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LSM1O15116 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.33■□□□□ 0.52
LSM1O15116 TSPY21P-201ENST00000433481 731 ntBASIC18.33■□□□□ 0.52
LSM1O15116 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.33■□□□□ 0.52
LSM1O15116 C1QL1P1-201ENST00000568105 661 ntBASIC18.33■□□□□ 0.52
LSM1O15116 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.33■□□□□ 0.52
LSM1O15116 AC092666.2-201ENST00000613287 246 ntBASIC18.33■□□□□ 0.52
LSM1O15116 HLA-A-209ENST00000638375 975 ntBASIC18.33■□□□□ 0.52
LSM1O15116 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.33■□□□□ 0.52
LSM1O15116 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LSM1O15116 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.33■□□□□ 0.52
LSM1O15116 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
LSM1O15116 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM1O15116 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LSM1O15116 NBPF21P-201ENST00000425093 1451 ntBASIC18.33■□□□□ 0.52
LSM1O15116 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.33■□□□□ 0.52
LSM1O15116 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
LSM1O15116 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
LSM1O15116 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.32■□□□□ 0.52
LSM1O15116 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
LSM1O15116 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
LSM1O15116 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LSM1O15116 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LSM1O15116 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.32■□□□□ 0.52
LSM1O15116 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM1O15116 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM1O15116 AC083906.6-201ENST00000641366 219 ntBASIC18.32■□□□□ 0.52
LSM1O15116 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.32■□□□□ 0.52
LSM1O15116 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM1O15116 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM1O15116 AC090164.3-201ENST00000610780 2143 ntBASIC18.32■□□□□ 0.52
LSM1O15116 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LSM1O15116 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 182 ms