RNA–Protein interactions for RNA: ENST00000330452.7

PRKCD-201, Transcript of protein kinase C delta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRKCD, Length 2,680 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCD-201ENST00000330452 NISCHQ9Y2I1 1504 aa34.84■■■■□ 3.17
PRKCD-201ENST00000330452 SHROOM4Q9ULL8 1493 aa29.81■■■□□ 2.36
PRKCD-201ENST00000330452 DCAF8L2P0C7V8 631 aa29.71■■■□□ 2.35
PRKCD-201ENST00000330452 CCDC180Q9P1Z9 1646 aa29.67■■■□□ 2.34
PRKCD-201ENST00000330452 PELP1Q8IZL8 1130 aaKnown RBP29.59■■■□□ 2.33
PRKCD-201ENST00000330452 ZCCHC6Q5VYS8 1495 aaKnown RBP29.3■■■□□ 2.28
PRKCD-201ENST00000330452 SUPT5HO00267 1087 aaKnown RBP29.06■■■□□ 2.24
PRKCD-201ENST00000330452 MYT1Q01538 1121 aa28.85■■■□□ 2.21
PRKCD-201ENST00000330452 HRCP23327 699 aa28.62■■■□□ 2.17
PRKCD-201ENST00000330452 ABCC9O60706 1549 aa28.6■■■□□ 2.17
PRKCD-201ENST00000330452 DCAF1Q9Y4B6 1507 aa28.3■■■□□ 2.12
PRKCD-201ENST00000330452 CHIC1Q5VXU3 224 aa28.21■■■□□ 2.11
PRKCD-201ENST00000330452 SCRIBQ14160 1630 aa28.15■■■□□ 2.1
PRKCD-201ENST00000330452 MYO15BQ96JP2 1530 aa28.11■■■□□ 2.09
PRKCD-201ENST00000330452 PPARGC1BQ86YN6 1023 aaKnown RBP27.93■■■□□ 2.06
PRKCD-201ENST00000330452 SCAF1Q9H7N4 1312 aaKnown RBP27.82■■■□□ 2.04
PRKCD-201ENST00000330452 NACADO15069 1562 aa27.67■■■□□ 2.02
PRKCD-201ENST00000330452 TTBK1Q5TCY1 1321 aaPredicted RBP27.51■■□□□ 1.99
PRKCD-201ENST00000330452 CECR2Q9BXF3 1484 aa27.46■■□□□ 1.99
PRKCD-201ENST00000330452 LOC105371045A0A1W2PR82 267 aa27.44■■□□□ 1.98
PRKCD-201ENST00000330452 RB1CC1Q8TDY2 1594 aa27.43■■□□□ 1.98
PRKCD-201ENST00000330452 RSF1Q96T23 1441 aaPredicted RBP27.43■■□□□ 1.98
PRKCD-201ENST00000330452 PABPN1Q86U42 306 aaKnown RBP eCLIP27.39■■□□□ 1.98
PRKCD-201ENST00000330452 PCGF6Q9BYE7 350 aa27.37■■□□□ 1.97
PRKCD-201ENST00000330452 MROH2BQ7Z745 1585 aa27.2■■□□□ 1.95
PRKCD-201ENST00000330452 UNC13AQ9UPW8 1703 aa27.09■■□□□ 1.93
PRKCD-201ENST00000330452 WIZO95785 1651 aa27.03■■□□□ 1.92
PRKCD-201ENST00000330452 TRIM41Q8WV44 630 aa27.02■■□□□ 1.92
PRKCD-201ENST00000330452 FAM9AQ8IZU1 332 aaPredicted RBP26.88■■□□□ 1.89
PRKCD-201ENST00000330452 PRKCSHP14314 528 aaPredicted RBP26.86■■□□□ 1.89
PRKCD-201ENST00000330452 EHMT2Q96KQ7 1210 aa26.86■■□□□ 1.89
PRKCD-201ENST00000330452 BCL11AQ9H165 835 aa26.83■■□□□ 1.89
PRKCD-201ENST00000330452 BICRAQ9NZM4 1560 aa26.81■■□□□ 1.88
PRKCD-201ENST00000330452 TRIM26Q12899 539 aaPredicted RBP26.79■■□□□ 1.88
PRKCD-201ENST00000330452 BAZ1AQ9NRL2 1556 aaPredicted RBP26.75■■□□□ 1.87
PRKCD-201ENST00000330452 ACIN1Q9UKV3 1341 aaKnown RBP26.71■■□□□ 1.87
PRKCD-201ENST00000330452 SMARCA4P51532 1647 aa26.66■■□□□ 1.86
PRKCD-201ENST00000330452 NEUROD1Q13562 356 aa26.56■■□□□ 1.84
PRKCD-201ENST00000330452 GTF3C3Q9Y5Q9 886 aa26.53■■□□□ 1.84
PRKCD-201ENST00000330452 CCDC88BA6NC98 1476 aa26.44■■□□□ 1.82
PRKCD-201ENST00000330452 CENPBP07199 599 aaPredicted RBP26.44■■□□□ 1.82
PRKCD-201ENST00000330452 TOP2AP11388 1531 aaKnown RBP26.4■■□□□ 1.82
PRKCD-201ENST00000330452 ZEB1P37275 1124 aaPredicted RBP26.36■■□□□ 1.81
PRKCD-201ENST00000330452 EIF4G1Q04637 1599 aaKnown RBP26.36■■□□□ 1.81
PRKCD-201ENST00000330452 SMARCA2P51531 1590 aa26.31■■□□□ 1.8
PRKCD-201ENST00000330452 ABCC8Q09428 1581 aa26.3■■□□□ 1.8
PRKCD-201ENST00000330452 ATAD2BQ9ULI0 1458 aa26.2■■□□□ 1.78
PRKCD-201ENST00000330452 ERICH6Q7L0X2 663 aa26.15■■□□□ 1.78
PRKCD-201ENST00000330452 BAZ1BQ9UIG0 1483 aaKnown RBP26.11■■□□□ 1.77
PRKCD-201ENST00000330452 APLP2Q06481 763 aa26.04■■□□□ 1.76
PRKCD-201ENST00000330452 PEG3Q9GZU2 1588 aa25.99■■□□□ 1.75
PRKCD-201ENST00000330452 SOGA1O94964 1423 aa25.98■■□□□ 1.75
PRKCD-201ENST00000330452 ANP32EQ9BTT0 268 aa25.94■■□□□ 1.74
PRKCD-201ENST00000330452 RUSC2Q8N2Y8 1516 aa25.89■■□□□ 1.74
PRKCD-201ENST00000330452 CEP162Q5TB80 1403 aa25.83■■□□□ 1.73
PRKCD-201ENST00000330452 CSRNP3Q8WYN3 585 aa25.82■■□□□ 1.72
PRKCD-201ENST00000330452 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.8■■□□□ 1.72
PRKCD-201ENST00000330452 WRNQ14191 1432 aaPredicted RBP eCLIP25.78■■□□□ 1.72
PRKCD-201ENST00000330452 TNIKQ9UKE5 1360 aa25.77■■□□□ 1.72
PRKCD-201ENST00000330452 UBTFP17480 764 aaKnown RBP25.76■■□□□ 1.71
PRKCD-201ENST00000330452 EEA1Q15075 1411 aa25.74■■□□□ 1.71
PRKCD-201ENST00000330452 SYNJ1O43426 1573 aa25.7■■□□□ 1.7
PRKCD-201ENST00000330452 NCAPD3P42695 1498 aa25.69■■□□□ 1.7
PRKCD-201ENST00000330452 CCER1Q8TC90 406 aaPredicted RBP25.69■■□□□ 1.7
PRKCD-201ENST00000330452 RANGAP1P46060 587 aaPredicted RBP25.68■■□□□ 1.7
PRKCD-201ENST00000330452 GOLGA3Q08378 1498 aa25.61■■□□□ 1.69
PRKCD-201ENST00000330452 DNAJC5BQ9UF47 199 aa25.58■■□□□ 1.69
PRKCD-201ENST00000330452 CC2D2AQ9P2K1 1620 aa25.55■■□□□ 1.68
PRKCD-201ENST00000330452 HMGXB3Q12766 1538 aa25.54■■□□□ 1.68
PRKCD-201ENST00000330452 DIEXFQ68CQ4 756 aaKnown RBP25.49■■□□□ 1.67
PRKCD-201ENST00000330452 CEP164Q9UPV0 1460 aa25.46■■□□□ 1.67
PRKCD-201ENST00000330452 KIF21BO75037 1637 aa25.39■■□□□ 1.65
PRKCD-201ENST00000330452 CFTRP13569 1480 aa25.35■■□□□ 1.65
PRKCD-201ENST00000330452 CLIP1P30622 1438 aa25.35■■□□□ 1.65
PRKCD-201ENST00000330452 RAPGEF2Q9Y4G8 1499 aa25.33■■□□□ 1.64
PRKCD-201ENST00000330452 CUX1P39880 1505 aa25.32■■□□□ 1.64
PRKCD-201ENST00000330452 NESP48681 1621 aa25.29■■□□□ 1.64
PRKCD-201ENST00000330452 TOP2BQ02880 1626 aa25.28■■□□□ 1.64
PRKCD-201ENST00000330452 CADPSQ9ULU8 1353 aa25.27■■□□□ 1.64
PRKCD-201ENST00000330452 TSHZ2Q9NRE2 1034 aa25.23■■□□□ 1.63
PRKCD-201ENST00000330452 VPS8Q8N3P4 1428 aa25.22■■□□□ 1.63
PRKCD-201ENST00000330452 HNRNPUL2Q1KMD3 747 aaKnown RBP25.21■■□□□ 1.63
PRKCD-201ENST00000330452 YTHDC1Q96MU7 727 aaKnown RBP25.19■■□□□ 1.62
PRKCD-201ENST00000330452 BIVM-ERCC5R4GMW8 1640 aa25.13■■□□□ 1.61
PRKCD-201ENST00000330452 FANCD2Q9BXW9 1451 aa25.06■■□□□ 1.6
PRKCD-201ENST00000330452 PRXQ9BXM0 1461 aa25.04■■□□□ 1.6
PRKCD-201ENST00000330452 CUX2O14529 1486 aa25.02■■□□□ 1.6
PRKCD-201ENST00000330452 ANO8Q9HCE9 1232 aaPredicted RBP25.01■■□□□ 1.59
PRKCD-201ENST00000330452 FGD5Q6ZNL6 1462 aa25■■□□□ 1.59
PRKCD-201ENST00000330452 KIF27Q86VH2 1401 aa25■■□□□ 1.59
PRKCD-201ENST00000330452 ERICH3Q5RHP9 1530 aa24.98■■□□□ 1.59
PRKCD-201ENST00000330452 ZNF316A6NFI3 1004 aaPredicted RBP24.98■■□□□ 1.59
PRKCD-201ENST00000330452 RAD54L2Q9Y4B4 1467 aa24.97■■□□□ 1.59
PRKCD-201ENST00000330452 SUPT16HQ9Y5B9 1047 aaKnown RBP24.96■■□□□ 1.59
PRKCD-201ENST00000330452 ARAP1Q96P48 1450 aa24.93■■□□□ 1.58
PRKCD-201ENST00000330452 PRDM2Q13029 1718 aa24.89■■□□□ 1.57
PRKCD-201ENST00000330452 KANK4Q5T7N3 995 aaPredicted RBP24.88■■□□□ 1.57
PRKCD-201ENST00000330452 IGF1RP08069 1367 aa24.87■■□□□ 1.57
PRKCD-201ENST00000330452 CLSPNQ9HAW4 1339 aa24.85■■□□□ 1.57
PRKCD-201ENST00000330452 P3H3Q8IVL6 736 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms