RNA–Protein interactions for RNA: ENST00000254816.5

TRIM47-201, Transcript of tripartite motif containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM47, Length 2,266 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-201ENST00000254816 NISCHQ9Y2I1 1504 aa42.63■■■■■ 4.42
TRIM47-201ENST00000254816 CCDC180Q9P1Z9 1646 aa37.11■■■■□ 3.53
TRIM47-201ENST00000254816 ZCCHC6Q5VYS8 1495 aaKnown RBP35.81■■■■□ 3.32
TRIM47-201ENST00000254816 DCAF8L2P0C7V8 631 aa35.38■■■■□ 3.25
TRIM47-201ENST00000254816 ABCC9O60706 1549 aa35.18■■■■□ 3.22
TRIM47-201ENST00000254816 DCAF1Q9Y4B6 1507 aa35.13■■■■□ 3.21
TRIM47-201ENST00000254816 SHROOM4Q9ULL8 1493 aa35.04■■■■□ 3.2
TRIM47-201ENST00000254816 MYO15BQ96JP2 1530 aa34.65■■■■□ 3.14
TRIM47-201ENST00000254816 NACADO15069 1562 aa34.52■■■■□ 3.12
TRIM47-201ENST00000254816 SCRIBQ14160 1630 aa34.29■■■■□ 3.08
TRIM47-201ENST00000254816 RB1CC1Q8TDY2 1594 aa34.25■■■■□ 3.07
TRIM47-201ENST00000254816 UNC13AQ9UPW8 1703 aa33.75■■■□□ 2.99
TRIM47-201ENST00000254816 SUPT5HO00267 1087 aaKnown RBP33.7■■■□□ 2.99
TRIM47-201ENST00000254816 BICRAQ9NZM4 1560 aa33.29■■■□□ 2.92
TRIM47-201ENST00000254816 PABPN1Q86U42 306 aaKnown RBP eCLIP33.24■■■□□ 2.91
TRIM47-201ENST00000254816 CECR2Q9BXF3 1484 aa33.22■■■□□ 2.91
TRIM47-201ENST00000254816 RSF1Q96T23 1441 aaPredicted RBP33.12■■■□□ 2.89
TRIM47-201ENST00000254816 MROH2BQ7Z745 1585 aa33.01■■■□□ 2.87
TRIM47-201ENST00000254816 BAZ1AQ9NRL2 1556 aaPredicted RBP32.89■■■□□ 2.86
TRIM47-201ENST00000254816 WIZO95785 1651 aa32.81■■■□□ 2.84
TRIM47-201ENST00000254816 SMARCA4P51532 1647 aa32.8■■■□□ 2.84
TRIM47-201ENST00000254816 TOP2AP11388 1531 aaKnown RBP32.34■■■□□ 2.77
TRIM47-201ENST00000254816 PEG3Q9GZU2 1588 aa32.3■■■□□ 2.76
TRIM47-201ENST00000254816 EIF4G1Q04637 1599 aaKnown RBP32.27■■■□□ 2.76
TRIM47-201ENST00000254816 CHIC1Q5VXU3 224 aa32.21■■■□□ 2.75
TRIM47-201ENST00000254816 ATAD2BQ9ULI0 1458 aa32.21■■■□□ 2.75
TRIM47-201ENST00000254816 SMARCA2P51531 1590 aa32.15■■■□□ 2.74
TRIM47-201ENST00000254816 CCDC88BA6NC98 1476 aa32.06■■■□□ 2.72
TRIM47-201ENST00000254816 BAZ1BQ9UIG0 1483 aaKnown RBP32.05■■■□□ 2.72
TRIM47-201ENST00000254816 NCAPD3P42695 1498 aa31.86■■■□□ 2.69
TRIM47-201ENST00000254816 HMGXB3Q12766 1538 aa31.83■■■□□ 2.69
TRIM47-201ENST00000254816 CC2D2AQ9P2K1 1620 aa31.81■■■□□ 2.68
TRIM47-201ENST00000254816 TRIM41Q8WV44 630 aa31.59■■■□□ 2.65
TRIM47-201ENST00000254816 ABCC8Q09428 1581 aa31.5■■■□□ 2.63
TRIM47-201ENST00000254816 CFTRP13569 1480 aa31.2■■■□□ 2.59
TRIM47-201ENST00000254816 WRNQ14191 1432 aaPredicted RBP eCLIP31.16■■■□□ 2.58
TRIM47-201ENST00000254816 FAM9AQ8IZU1 332 aaPredicted RBP31.16■■■□□ 2.58
TRIM47-201ENST00000254816 PRDM2Q13029 1718 aa31.13■■■□□ 2.57
TRIM47-201ENST00000254816 DNAJC5BQ9UF47 199 aa31.12■■■□□ 2.57
TRIM47-201ENST00000254816 SYNJ1O43426 1573 aa31.11■■■□□ 2.57
TRIM47-201ENST00000254816 LOC105371045A0A1W2PR82 267 aa31.1■■■□□ 2.57
TRIM47-201ENST00000254816 CADPSQ9ULU8 1353 aa31.09■■■□□ 2.57
TRIM47-201ENST00000254816 NESP48681 1621 aa30.94■■■□□ 2.54
TRIM47-201ENST00000254816 TOP2BQ02880 1626 aa30.91■■■□□ 2.54
TRIM47-201ENST00000254816 SOGA1O94964 1423 aa30.88■■■□□ 2.53
TRIM47-201ENST00000254816 BIVM-ERCC5R4GMW8 1640 aa30.88■■■□□ 2.53
TRIM47-201ENST00000254816 CUX1P39880 1505 aa30.85■■■□□ 2.53
TRIM47-201ENST00000254816 EHMT2Q96KQ7 1210 aa30.83■■■□□ 2.53
TRIM47-201ENST00000254816 RUSC2Q8N2Y8 1516 aa30.81■■■□□ 2.52
TRIM47-201ENST00000254816 LAMC3Q9Y6N6 1575 aa30.8■■■□□ 2.52
TRIM47-201ENST00000254816 FANCD2Q9BXW9 1451 aa30.79■■■□□ 2.52
TRIM47-201ENST00000254816 EEA1Q15075 1411 aa30.64■■■□□ 2.5
TRIM47-201ENST00000254816 CSRNP3Q8WYN3 585 aa30.59■■■□□ 2.49
TRIM47-201ENST00000254816 KIF21AQ7Z4S6 1674 aa30.57■■■□□ 2.49
TRIM47-201ENST00000254816 CEP164Q9UPV0 1460 aa30.57■■■□□ 2.48
TRIM47-201ENST00000254816 PDS5BQ9NTI5 1447 aa30.54■■■□□ 2.48
TRIM47-201ENST00000254816 DNMBPQ6XZF7 1577 aa30.5■■■□□ 2.47
TRIM47-201ENST00000254816 FGD5Q6ZNL6 1462 aa30.5■■■□□ 2.47
TRIM47-201ENST00000254816 TOPBP1Q92547 1522 aa30.47■■■□□ 2.47
TRIM47-201ENST00000254816 URB2Q14146 1524 aaKnown RBP30.42■■■□□ 2.46
TRIM47-201ENST00000254816 KIF27Q86VH2 1401 aa30.34■■■□□ 2.45
TRIM47-201ENST00000254816 KIF21BO75037 1637 aa30.34■■■□□ 2.45
TRIM47-201ENST00000254816 POLA1P09884 1462 aaPredicted RBP30.33■■■□□ 2.45
TRIM47-201ENST00000254816 GOLGA3Q08378 1498 aa30.32■■■□□ 2.44
TRIM47-201ENST00000254816 CUX2O14529 1486 aa30.31■■■□□ 2.44
TRIM47-201ENST00000254816 RAD54L2Q9Y4B4 1467 aa30.3■■■□□ 2.44
TRIM47-201ENST00000254816 UBTFP17480 764 aaKnown RBP30.27■■■□□ 2.44
TRIM47-201ENST00000254816 RAPGEF2Q9Y4G8 1499 aa30.23■■■□□ 2.43
TRIM47-201ENST00000254816 TNIKQ9UKE5 1360 aa30.21■■■□□ 2.43
TRIM47-201ENST00000254816 MRC2Q9UBG0 1479 aa30.18■■■□□ 2.42
TRIM47-201ENST00000254816 ABCA10Q8WWZ4 1543 aa30.16■■■□□ 2.42
TRIM47-201ENST00000254816 PRXQ9BXM0 1461 aa30.16■■■□□ 2.42
TRIM47-201ENST00000254816 WDR97A6NE52 1622 aa30.13■■■□□ 2.41
TRIM47-201ENST00000254816 CEP162Q5TB80 1403 aa30.12■■■□□ 2.41
TRIM47-201ENST00000254816 ERCC6Q03468 1493 aa30.11■■■□□ 2.41
TRIM47-201ENST00000254816 IGF1RP08069 1367 aa30.09■■■□□ 2.41
TRIM47-201ENST00000254816 ERICH3Q5RHP9 1530 aa30.09■■■□□ 2.41
TRIM47-201ENST00000254816 TARBP1Q13395 1621 aaKnown RBP30.02■■■□□ 2.4
TRIM47-201ENST00000254816 WDR62O43379 1518 aa30.02■■■□□ 2.4
TRIM47-201ENST00000254816 TDRD9Q8NDG6 1382 aaKnown RBP29.98■■■□□ 2.39
TRIM47-201ENST00000254816 THOC2Q8NI27 1593 aaKnown RBP29.97■■■□□ 2.39
TRIM47-201ENST00000254816 ABCA5Q8WWZ7 1642 aa29.96■■■□□ 2.39
TRIM47-201ENST00000254816 CARMIL1Q5VZK9 1371 aa29.95■■■□□ 2.38
TRIM47-201ENST00000254816 RANGAP1P46060 587 aaPredicted RBP29.91■■■□□ 2.38
TRIM47-201ENST00000254816 GAPVD1Q14C86 1478 aa29.89■■■□□ 2.37
TRIM47-201ENST00000254816 CLIP1P30622 1438 aa29.87■■■□□ 2.37
TRIM47-201ENST00000254816 CUL7Q14999 1698 aa29.85■■■□□ 2.37
TRIM47-201ENST00000254816 PBRM1Q86U86 1689 aa29.79■■■□□ 2.36
TRIM47-201ENST00000254816 IFT140Q96RY7 1462 aa29.79■■■□□ 2.36
TRIM47-201ENST00000254816 AQRO60306 1485 aaKnown RBP eCLIP29.78■■■□□ 2.367e-7■■■■■ 34.8
TRIM47-201ENST00000254816 ZNF608Q9ULD9 1512 aaPredicted RBP29.75■■■□□ 2.35
TRIM47-201ENST00000254816 PPARGC1BQ86YN6 1023 aaKnown RBP29.73■■■□□ 2.35
TRIM47-201ENST00000254816 PCGF6Q9BYE7 350 aa29.71■■■□□ 2.35
TRIM47-201ENST00000254816 EIF4G3O43432 1585 aaKnown RBP29.63■■■□□ 2.33
TRIM47-201ENST00000254816 CTTNBP2Q8WZ74 1663 aa29.61■■■□□ 2.33
TRIM47-201ENST00000254816 GRIN2BQ13224 1484 aa29.6■■■□□ 2.33
TRIM47-201ENST00000254816 ARAP1Q96P48 1450 aa29.59■■■□□ 2.33
TRIM47-201ENST00000254816 VPS8Q8N3P4 1428 aa29.59■■■□□ 2.33
TRIM47-201ENST00000254816 TRIM26Q12899 539 aaPredicted RBP29.58■■■□□ 2.33
TRIM47-201ENST00000254816 ADAMTS12P58397 1594 aa29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms