RNA–Protein interactions for RNA: ENST00000303545.3

RNF139-201, Transcript of ring finger protein 139, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF139, Length 2,637 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139-201ENST00000303545 NISCHQ9Y2I1 1504 aa39.54■■■■□ 3.92
RNF139-201ENST00000303545 SHROOM4Q9ULL8 1493 aa33.73■■■□□ 2.99
RNF139-201ENST00000303545 CCDC180Q9P1Z9 1646 aa33.7■■■□□ 2.98
RNF139-201ENST00000303545 ZCCHC6Q5VYS8 1495 aaKnown RBP33.35■■■□□ 2.93
RNF139-201ENST00000303545 DCAF8L2P0C7V8 631 aa33.19■■■□□ 2.9
RNF139-201ENST00000303545 SUPT5HO00267 1087 aaKnown RBP32.89■■■□□ 2.86
RNF139-201ENST00000303545 DCAF1Q9Y4B6 1507 aa32.3■■■□□ 2.76
RNF139-201ENST00000303545 ABCC9O60706 1549 aa31.75■■■□□ 2.67
RNF139-201ENST00000303545 SCRIBQ14160 1630 aa31.73■■■□□ 2.67
RNF139-201ENST00000303545 CHIC1Q5VXU3 224 aa31.68■■■□□ 2.66
RNF139-201ENST00000303545 MYO15BQ96JP2 1530 aa31.51■■■□□ 2.63
RNF139-201ENST00000303545 NACADO15069 1562 aa31.26■■■□□ 2.59
RNF139-201ENST00000303545 RSF1Q96T23 1441 aaPredicted RBP31.19■■■□□ 2.58
RNF139-201ENST00000303545 CECR2Q9BXF3 1484 aa30.97■■■□□ 2.55
RNF139-201ENST00000303545 RB1CC1Q8TDY2 1594 aa30.87■■■□□ 2.53
RNF139-201ENST00000303545 LOC105371045A0A1W2PR82 267 aa30.85■■■□□ 2.53
RNF139-201ENST00000303545 MROH2BQ7Z745 1585 aa30.8■■■□□ 2.52
RNF139-201ENST00000303545 WIZO95785 1651 aa30.65■■■□□ 2.5
RNF139-201ENST00000303545 TRIM41Q8WV44 630 aa30.57■■■□□ 2.48
RNF139-201ENST00000303545 UNC13AQ9UPW8 1703 aa30.48■■■□□ 2.47
RNF139-201ENST00000303545 FAM9AQ8IZU1 332 aaPredicted RBP30.46■■■□□ 2.47
RNF139-201ENST00000303545 PCGF6Q9BYE7 350 aa30.43■■■□□ 2.46
RNF139-201ENST00000303545 PABPN1Q86U42 306 aaKnown RBP eCLIP30.37■■■□□ 2.45
RNF139-201ENST00000303545 BAZ1AQ9NRL2 1556 aaPredicted RBP30.37■■■□□ 2.45
RNF139-201ENST00000303545 EHMT2Q96KQ7 1210 aa30.34■■■□□ 2.45
RNF139-201ENST00000303545 SMARCA4P51532 1647 aa30.21■■■□□ 2.43
RNF139-201ENST00000303545 BICRAQ9NZM4 1560 aa30.08■■■□□ 2.41
RNF139-201ENST00000303545 HRCP23327 699 aa30.05■■■□□ 2.4
RNF139-201ENST00000303545 TOP2AP11388 1531 aaKnown RBP30.05■■■□□ 2.4
RNF139-201ENST00000303545 CCDC88BA6NC98 1476 aa29.99■■■□□ 2.39
RNF139-201ENST00000303545 EIF4G1Q04637 1599 aaKnown RBP29.94■■■□□ 2.38
RNF139-201ENST00000303545 SMARCA2P51531 1590 aa29.91■■■□□ 2.38
RNF139-201ENST00000303545 ABCC8Q09428 1581 aa29.87■■■□□ 2.37
RNF139-201ENST00000303545 TRIM26Q12899 539 aaPredicted RBP29.8■■■□□ 2.36
RNF139-201ENST00000303545 PPARGC1BQ86YN6 1023 aaKnown RBP29.69■■■□□ 2.34
RNF139-201ENST00000303545 PEG3Q9GZU2 1588 aa29.53■■■□□ 2.32
RNF139-201ENST00000303545 ATAD2BQ9ULI0 1458 aa29.52■■■□□ 2.32
RNF139-201ENST00000303545 SOGA1O94964 1423 aa29.5■■■□□ 2.31
RNF139-201ENST00000303545 BAZ1BQ9UIG0 1483 aaKnown RBP29.44■■■□□ 2.3
RNF139-201ENST00000303545 RUSC2Q8N2Y8 1516 aa29.4■■■□□ 2.3
RNF139-201ENST00000303545 WRNQ14191 1432 aaPredicted RBP eCLIP29.32■■■□□ 2.28
RNF139-201ENST00000303545 CSRNP3Q8WYN3 585 aa29.25■■■□□ 2.27
RNF139-201ENST00000303545 TTBK1Q5TCY1 1321 aaPredicted RBP29.23■■■□□ 2.27
RNF139-201ENST00000303545 SYNJ1O43426 1573 aa29.22■■■□□ 2.27
RNF139-201ENST00000303545 UBTFP17480 764 aaKnown RBP29.21■■■□□ 2.27
RNF139-201ENST00000303545 CEP162Q5TB80 1403 aa29.15■■■□□ 2.26
RNF139-201ENST00000303545 EEA1Q15075 1411 aa29.09■■■□□ 2.25
RNF139-201ENST00000303545 TNIKQ9UKE5 1360 aa29.06■■■□□ 2.24
RNF139-201ENST00000303545 GOLGA3Q08378 1498 aa28.98■■■□□ 2.23
RNF139-201ENST00000303545 NCAPD3P42695 1498 aa28.94■■■□□ 2.22
RNF139-201ENST00000303545 RANGAP1P46060 587 aaPredicted RBP28.9■■■□□ 2.22
RNF139-201ENST00000303545 HMGXB3Q12766 1538 aa28.89■■■□□ 2.22
RNF139-201ENST00000303545 ZEB1P37275 1124 aaPredicted RBP28.88■■■□□ 2.21
RNF139-201ENST00000303545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.85■■■□□ 2.21
RNF139-201ENST00000303545 CEP164Q9UPV0 1460 aa28.84■■■□□ 2.21
RNF139-201ENST00000303545 TOP2BQ02880 1626 aa28.81■■■□□ 2.2
RNF139-201ENST00000303545 RAPGEF2Q9Y4G8 1499 aa28.77■■■□□ 2.2
RNF139-201ENST00000303545 KIF21BO75037 1637 aa28.76■■■□□ 2.19
RNF139-201ENST00000303545 BIVM-ERCC5R4GMW8 1640 aa28.7■■■□□ 2.18
RNF139-201ENST00000303545 CCER1Q8TC90 406 aaPredicted RBP28.69■■■□□ 2.18
RNF139-201ENST00000303545 CLIP1P30622 1438 aa28.68■■■□□ 2.18
RNF139-201ENST00000303545 CUX1P39880 1505 aa28.67■■■□□ 2.18
RNF139-201ENST00000303545 CFTRP13569 1480 aa28.64■■■□□ 2.18
RNF139-201ENST00000303545 CC2D2AQ9P2K1 1620 aa28.52■■■□□ 2.16
RNF139-201ENST00000303545 VPS8Q8N3P4 1428 aa28.46■■■□□ 2.15
RNF139-201ENST00000303545 PRXQ9BXM0 1461 aa28.43■■■□□ 2.14
RNF139-201ENST00000303545 CADPSQ9ULU8 1353 aa28.42■■■□□ 2.14
RNF139-201ENST00000303545 KIF27Q86VH2 1401 aa28.42■■■□□ 2.14
RNF139-201ENST00000303545 APLP2Q06481 763 aa28.42■■■□□ 2.14
RNF139-201ENST00000303545 HNRNPUL2Q1KMD3 747 aaKnown RBP28.4■■■□□ 2.14
RNF139-201ENST00000303545 PRDM2Q13029 1718 aa28.37■■■□□ 2.13
RNF139-201ENST00000303545 ERICH3Q5RHP9 1530 aa28.35■■■□□ 2.13
RNF139-201ENST00000303545 CUX2O14529 1486 aa28.29■■■□□ 2.12
RNF139-201ENST00000303545 ARAP1Q96P48 1450 aa28.25■■■□□ 2.11
RNF139-201ENST00000303545 FGD5Q6ZNL6 1462 aa28.23■■■□□ 2.11
RNF139-201ENST00000303545 NESP48681 1621 aa28.2■■■□□ 2.1
RNF139-201ENST00000303545 FANCD2Q9BXW9 1451 aa28.18■■■□□ 2.1
RNF139-201ENST00000303545 IGF1RP08069 1367 aa28.18■■■□□ 2.1
RNF139-201ENST00000303545 KANK4Q5T7N3 995 aaPredicted RBP28.16■■■□□ 2.1
RNF139-201ENST00000303545 DNAJC5BQ9UF47 199 aa28.08■■■□□ 2.09
RNF139-201ENST00000303545 ARHGAP35Q9NRY4 1499 aa28.07■■■□□ 2.08
RNF139-201ENST00000303545 CARMIL1Q5VZK9 1371 aa28.06■■■□□ 2.08
RNF139-201ENST00000303545 RAD54L2Q9Y4B4 1467 aa28.06■■■□□ 2.08
RNF139-201ENST00000303545 P3H3Q8IVL6 736 aa27.96■■■□□ 2.07
RNF139-201ENST00000303545 TOPBP1Q92547 1522 aa27.95■■■□□ 2.07
RNF139-201ENST00000303545 DNMBPQ6XZF7 1577 aa27.94■■■□□ 2.06
RNF139-201ENST00000303545 POLA1P09884 1462 aaPredicted RBP27.93■■■□□ 2.06
RNF139-201ENST00000303545 DIEXFQ68CQ4 756 aaKnown RBP27.88■■■□□ 2.05
RNF139-201ENST00000303545 ITGAEP38570 1179 aa27.85■■■□□ 2.05
RNF139-201ENST00000303545 ATP1B4Q9UN42 357 aaPredicted RBP27.84■■■□□ 2.05
RNF139-201ENST00000303545 URB2Q14146 1524 aaKnown RBP27.81■■■□□ 2.04
RNF139-201ENST00000303545 ABCA10Q8WWZ4 1543 aa27.81■■■□□ 2.04
RNF139-201ENST00000303545 LAMC3Q9Y6N6 1575 aa27.76■■■□□ 2.04
RNF139-201ENST00000303545 TDRD9Q8NDG6 1382 aaKnown RBP27.75■■■□□ 2.03
RNF139-201ENST00000303545 ZNF316A6NFI3 1004 aaPredicted RBP27.73■■■□□ 2.03
RNF139-201ENST00000303545 RRBP1Q9P2E9 1410 aaKnown RBP27.71■■■□□ 2.03
RNF139-201ENST00000303545 FHOD3Q2V2M9 1422 aa27.7■■■□□ 2.02
RNF139-201ENST00000303545 CCNB3Q8WWL7 1395 aa27.69■■■□□ 2.02
RNF139-201ENST00000303545 TIAM1Q13009 1591 aa27.67■■■□□ 2.02
RNF139-201ENST00000303545 KIF21AQ7Z4S6 1674 aa27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms