Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 AC012317.2-201ENST00000623305 2251 ntBASIC13.37□□□□□ -0.27
VPS25Q9BRG1 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 AC011676.5-201ENST00000624864 2660 ntBASIC13.36□□□□□ -0.27
VPS25Q9BRG1 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 SMPD5-203ENST00000639008 1464 ntBASIC13.36□□□□□ -0.27
VPS25Q9BRG1 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 AC025884.2-201ENST00000553429 711 ntBASIC13.36□□□□□ -0.27
VPS25Q9BRG1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 CROCCP3-202ENST00000420820 1947 ntBASIC13.36□□□□□ -0.27
VPS25Q9BRG1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 NKILA-202ENST00000614771 2598 ntBASIC13.36□□□□□ -0.27
VPS25Q9BRG1 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
VPS25Q9BRG1 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 LINC02228-204ENST00000642115 2962 ntBASIC13.35□□□□□ -0.27
VPS25Q9BRG1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 UBALD1-205ENST00000590891 2641 ntBASIC13.35□□□□□ -0.27
VPS25Q9BRG1 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS25Q9BRG1 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
VPS25Q9BRG1 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS25Q9BRG1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS25Q9BRG1 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS25Q9BRG1 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS25Q9BRG1 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS25Q9BRG1 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS25Q9BRG1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms