RNA–Protein interactions for RNA: ENST00000318080.6

CRAT-201, Transcript of carnitine O-acetyltransferase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRAT, Length 2,763 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRAT-201ENST00000318080 NISCHQ9Y2I1 1504 aa33.2■■■□□ 2.91
CRAT-201ENST00000318080 CCDC180Q9P1Z9 1646 aa28.81■■■□□ 2.2
CRAT-201ENST00000318080 DCAF8L2P0C7V8 631 aa27.87■■■□□ 2.05
CRAT-201ENST00000318080 ZCCHC6Q5VYS8 1495 aaKnown RBP27.84■■■□□ 2.05
CRAT-201ENST00000318080 SHROOM4Q9ULL8 1493 aa27.81■■■□□ 2.04
CRAT-201ENST00000318080 ABCC9O60706 1549 aa27.79■■■□□ 2.04
CRAT-201ENST00000318080 SUPT5HO00267 1087 aaKnown RBP27.45■■□□□ 1.98
CRAT-201ENST00000318080 DCAF1Q9Y4B6 1507 aa27.23■■□□□ 1.95
CRAT-201ENST00000318080 NACADO15069 1562 aa26.91■■□□□ 1.9
CRAT-201ENST00000318080 HRCP23327 699 aa26.91■■□□□ 1.9
CRAT-201ENST00000318080 MYO15BQ96JP2 1530 aa26.9■■□□□ 1.9
CRAT-201ENST00000318080 SCRIBQ14160 1630 aa26.82■■□□□ 1.88
CRAT-201ENST00000318080 PPARGC1BQ86YN6 1023 aaKnown RBP26.8■■□□□ 1.88
CRAT-201ENST00000318080 RB1CC1Q8TDY2 1594 aa26.77■■□□□ 1.88
CRAT-201ENST00000318080 CHIC1Q5VXU3 224 aa26.76■■□□□ 1.87
CRAT-201ENST00000318080 PCGF6Q9BYE7 350 aa26.67■■□□□ 1.86
CRAT-201ENST00000318080 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
CRAT-201ENST00000318080 PABPN1Q86U42 306 aaKnown RBP eCLIP26.31■■□□□ 1.8
CRAT-201ENST00000318080 LOC105371045A0A1W2PR82 267 aa26.19■■□□□ 1.78
CRAT-201ENST00000318080 BICRAQ9NZM4 1560 aa26.11■■□□□ 1.77
CRAT-201ENST00000318080 CECR2Q9BXF3 1484 aa26.02■■□□□ 1.76
CRAT-201ENST00000318080 PELP1Q8IZL8 1130 aaKnown RBP25.87■■□□□ 1.73
CRAT-201ENST00000318080 RSF1Q96T23 1441 aaPredicted RBP25.8■■□□□ 1.72
CRAT-201ENST00000318080 MROH2BQ7Z745 1585 aa25.78■■□□□ 1.72
CRAT-201ENST00000318080 TRIM26Q12899 539 aaPredicted RBP25.68■■□□□ 1.7
CRAT-201ENST00000318080 SCAF1Q9H7N4 1312 aaKnown RBP25.61■■□□□ 1.69
CRAT-201ENST00000318080 BAZ1AQ9NRL2 1556 aaPredicted RBP25.58■■□□□ 1.69
CRAT-201ENST00000318080 WIZO95785 1651 aa25.57■■□□□ 1.68
CRAT-201ENST00000318080 SMARCA4P51532 1647 aa25.55■■□□□ 1.68
CRAT-201ENST00000318080 FAM9AQ8IZU1 332 aaPredicted RBP25.42■■□□□ 1.66
CRAT-201ENST00000318080 EHMT2Q96KQ7 1210 aa25.38■■□□□ 1.65
CRAT-201ENST00000318080 TRIM41Q8WV44 630 aa25.37■■□□□ 1.65
CRAT-201ENST00000318080 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
CRAT-201ENST00000318080 ATAD2BQ9ULI0 1458 aa25.2■■□□□ 1.63
CRAT-201ENST00000318080 ZEB1P37275 1124 aaPredicted RBP25.14■■□□□ 1.62
CRAT-201ENST00000318080 TOP2AP11388 1531 aaKnown RBP25.13■■□□□ 1.61
CRAT-201ENST00000318080 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
CRAT-201ENST00000318080 BAZ1BQ9UIG0 1483 aaKnown RBP25.05■■□□□ 1.6
CRAT-201ENST00000318080 SMARCA2P51531 1590 aa25.05■■□□□ 1.6
CRAT-201ENST00000318080 MYT1Q01538 1121 aa25.05■■□□□ 1.6
CRAT-201ENST00000318080 CC2D2AQ9P2K1 1620 aa25.01■■□□□ 1.59
CRAT-201ENST00000318080 CCDC88BA6NC98 1476 aa25.01■■□□□ 1.59
CRAT-201ENST00000318080 NEUROD1Q13562 356 aa24.95■■□□□ 1.58
CRAT-201ENST00000318080 NCAPD3P42695 1498 aa24.92■■□□□ 1.58
CRAT-201ENST00000318080 ACIN1Q9UKV3 1341 aaKnown RBP24.83■■□□□ 1.57
CRAT-201ENST00000318080 DNAJC5BQ9UF47 199 aa24.83■■□□□ 1.57
CRAT-201ENST00000318080 HMGXB3Q12766 1538 aa24.81■■□□□ 1.56
CRAT-201ENST00000318080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.8■■□□□ 1.56
CRAT-201ENST00000318080 GTF3C3Q9Y5Q9 886 aa24.79■■□□□ 1.56
CRAT-201ENST00000318080 CCER1Q8TC90 406 aaPredicted RBP24.64■■□□□ 1.53
CRAT-201ENST00000318080 TTBK1Q5TCY1 1321 aaPredicted RBP24.63■■□□□ 1.53
CRAT-201ENST00000318080 ABCC8Q09428 1581 aa24.55■■□□□ 1.52
CRAT-201ENST00000318080 DIEXFQ68CQ4 756 aaKnown RBP24.51■■□□□ 1.51
CRAT-201ENST00000318080 YTHDC1Q96MU7 727 aaKnown RBP24.42■■□□□ 1.5
CRAT-201ENST00000318080 CENPBP07199 599 aaPredicted RBP24.4■■□□□ 1.5
CRAT-201ENST00000318080 NESP48681 1621 aa24.39■■□□□ 1.5
CRAT-201ENST00000318080 CFTRP13569 1480 aa24.37■■□□□ 1.49
CRAT-201ENST00000318080 CADPSQ9ULU8 1353 aa24.34■■□□□ 1.49
CRAT-201ENST00000318080 SOGA1O94964 1423 aa24.28■■□□□ 1.48
CRAT-201ENST00000318080 CEP162Q5TB80 1403 aa24.26■■□□□ 1.47
CRAT-201ENST00000318080 WRNQ14191 1432 aaPredicted RBP eCLIP24.25■■□□□ 1.47
CRAT-201ENST00000318080 SYNJ1O43426 1573 aa24.22■■□□□ 1.47
CRAT-201ENST00000318080 RUSC2Q8N2Y8 1516 aa24.18■■□□□ 1.46
CRAT-201ENST00000318080 UBTFP17480 764 aaKnown RBP24.14■■□□□ 1.45
CRAT-201ENST00000318080 FANCD2Q9BXW9 1451 aa24.11■■□□□ 1.45
CRAT-201ENST00000318080 TNIKQ9UKE5 1360 aa24.11■■□□□ 1.45
CRAT-201ENST00000318080 CSRNP3Q8WYN3 585 aa24.09■■□□□ 1.45
CRAT-201ENST00000318080 PRDM2Q13029 1718 aa24.09■■□□□ 1.45
CRAT-201ENST00000318080 CUX1P39880 1505 aa24.08■■□□□ 1.45
CRAT-201ENST00000318080 LAMC3Q9Y6N6 1575 aa24.05■■□□□ 1.44
CRAT-201ENST00000318080 ZNF316A6NFI3 1004 aaPredicted RBP24.03■■□□□ 1.44
CRAT-201ENST00000318080 MIER1Q8N108 512 aa24■■□□□ 1.43
CRAT-201ENST00000318080 TOP2BQ02880 1626 aa23.99■■□□□ 1.43
CRAT-201ENST00000318080 HNRNPUL2Q1KMD3 747 aaKnown RBP23.97■■□□□ 1.43
CRAT-201ENST00000318080 KIF21AQ7Z4S6 1674 aa23.95■■□□□ 1.42
CRAT-201ENST00000318080 BIVM-ERCC5R4GMW8 1640 aa23.93■■□□□ 1.42
CRAT-201ENST00000318080 CEP164Q9UPV0 1460 aa23.92■■□□□ 1.42
CRAT-201ENST00000318080 PDS5BQ9NTI5 1447 aa23.92■■□□□ 1.42
CRAT-201ENST00000318080 URB2Q14146 1524 aaKnown RBP23.86■■□□□ 1.41
CRAT-201ENST00000318080 GOLGA3Q08378 1498 aa23.86■■□□□ 1.41
CRAT-201ENST00000318080 EEA1Q15075 1411 aa23.86■■□□□ 1.41
CRAT-201ENST00000318080 FGD5Q6ZNL6 1462 aa23.83■■□□□ 1.41
CRAT-201ENST00000318080 TOPBP1Q92547 1522 aa23.82■■□□□ 1.4
CRAT-201ENST00000318080 RANGAP1P46060 587 aaPredicted RBP23.8■■□□□ 1.4
CRAT-201ENST00000318080 RAD54L2Q9Y4B4 1467 aa23.77■■□□□ 1.4
CRAT-201ENST00000318080 DNMBPQ6XZF7 1577 aa23.77■■□□□ 1.4
CRAT-201ENST00000318080 POLA1P09884 1462 aaPredicted RBP23.73■■□□□ 1.39
CRAT-201ENST00000318080 ERCC6Q03468 1493 aa23.73■■□□□ 1.39
CRAT-201ENST00000318080 CLIP1P30622 1438 aa23.7■■□□□ 1.39
CRAT-201ENST00000318080 CUX2O14529 1486 aa23.67■■□□□ 1.38
CRAT-201ENST00000318080 BCL11AQ9H165 835 aa23.66■■□□□ 1.38
CRAT-201ENST00000318080 MRC2Q9UBG0 1479 aa23.65■■□□□ 1.38
CRAT-201ENST00000318080 RAPGEF2Q9Y4G8 1499 aa23.6■■□□□ 1.37
CRAT-201ENST00000318080 VPS8Q8N3P4 1428 aa23.6■■□□□ 1.37
CRAT-201ENST00000318080 KIF27Q86VH2 1401 aa23.59■■□□□ 1.37
CRAT-201ENST00000318080 APLP2Q06481 763 aa23.57■■□□□ 1.36
CRAT-201ENST00000318080 TDRD9Q8NDG6 1382 aaKnown RBP23.57■■□□□ 1.36
CRAT-201ENST00000318080 KIF21BO75037 1637 aa23.56■■□□□ 1.36
CRAT-201ENST00000318080 THOC2Q8NI27 1593 aaKnown RBP23.51■■□□□ 1.35
CRAT-201ENST00000318080 SUPT16HQ9Y5B9 1047 aaKnown RBP23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms