RNA–Protein interactions for RNA: ENST00000566549.5

MSLN-207, Transcript of mesothelin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSLN, Length 2,418 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSLN-207ENST00000566549 NISCHQ9Y2I1 1504 aa39.93■■■■□ 3.98
MSLN-207ENST00000566549 CCDC180Q9P1Z9 1646 aa34.09■■■■□ 3.05
MSLN-207ENST00000566549 SHROOM4Q9ULL8 1493 aa33.83■■■■□ 3.01
MSLN-207ENST00000566549 ZCCHC6Q5VYS8 1495 aaKnown RBP33.69■■■□□ 2.98
MSLN-207ENST00000566549 DCAF8L2P0C7V8 631 aa33.36■■■□□ 2.93
MSLN-207ENST00000566549 SUPT5HO00267 1087 aaKnown RBP32.96■■■□□ 2.87
MSLN-207ENST00000566549 DCAF1Q9Y4B6 1507 aa32.72■■■□□ 2.83
MSLN-207ENST00000566549 ABCC9O60706 1549 aa32.07■■■□□ 2.72
MSLN-207ENST00000566549 SCRIBQ14160 1630 aa31.98■■■□□ 2.71
MSLN-207ENST00000566549 MYO15BQ96JP2 1530 aa31.93■■■□□ 2.7
MSLN-207ENST00000566549 CHIC1Q5VXU3 224 aa31.78■■■□□ 2.68
MSLN-207ENST00000566549 NACADO15069 1562 aa31.66■■■□□ 2.66
MSLN-207ENST00000566549 RSF1Q96T23 1441 aaPredicted RBP31.45■■■□□ 2.62
MSLN-207ENST00000566549 RB1CC1Q8TDY2 1594 aa31.25■■■□□ 2.59
MSLN-207ENST00000566549 CECR2Q9BXF3 1484 aa31.21■■■□□ 2.59
MSLN-207ENST00000566549 MROH2BQ7Z745 1585 aa31.04■■■□□ 2.56
MSLN-207ENST00000566549 LOC105371045A0A1W2PR82 267 aa30.85■■■□□ 2.53
MSLN-207ENST00000566549 WIZO95785 1651 aa30.83■■■□□ 2.53
MSLN-207ENST00000566549 TRIM41Q8WV44 630 aa30.71■■■□□ 2.51
MSLN-207ENST00000566549 BAZ1AQ9NRL2 1556 aaPredicted RBP30.7■■■□□ 2.51
MSLN-207ENST00000566549 UNC13AQ9UPW8 1703 aa30.7■■■□□ 2.5
MSLN-207ENST00000566549 PABPN1Q86U42 306 aaKnown RBP eCLIP30.62■■■□□ 2.49
MSLN-207ENST00000566549 SMARCA4P51532 1647 aa30.49■■■□□ 2.47
MSLN-207ENST00000566549 FAM9AQ8IZU1 332 aaPredicted RBP30.49■■■□□ 2.47
MSLN-207ENST00000566549 BICRAQ9NZM4 1560 aa30.4■■■□□ 2.46
MSLN-207ENST00000566549 PCGF6Q9BYE7 350 aa30.38■■■□□ 2.45
MSLN-207ENST00000566549 TOP2AP11388 1531 aaKnown RBP30.34■■■□□ 2.45
MSLN-207ENST00000566549 EHMT2Q96KQ7 1210 aa30.29■■■□□ 2.44
MSLN-207ENST00000566549 CCDC88BA6NC98 1476 aa30.23■■■□□ 2.43
MSLN-207ENST00000566549 EIF4G1Q04637 1599 aaKnown RBP30.19■■■□□ 2.42
MSLN-207ENST00000566549 SMARCA2P51531 1590 aa30.16■■■□□ 2.42
MSLN-207ENST00000566549 ABCC8Q09428 1581 aa30.02■■■□□ 2.4
MSLN-207ENST00000566549 HRCP23327 699 aa30.02■■■□□ 2.4
MSLN-207ENST00000566549 PEG3Q9GZU2 1588 aa29.89■■■□□ 2.38
MSLN-207ENST00000566549 TRIM26Q12899 539 aaPredicted RBP29.86■■■□□ 2.37
MSLN-207ENST00000566549 ATAD2BQ9ULI0 1458 aa29.84■■■□□ 2.37
MSLN-207ENST00000566549 BAZ1BQ9UIG0 1483 aaKnown RBP29.75■■■□□ 2.35
MSLN-207ENST00000566549 SOGA1O94964 1423 aa29.67■■■□□ 2.34
MSLN-207ENST00000566549 WRNQ14191 1432 aaPredicted RBP eCLIP29.57■■■□□ 2.32
MSLN-207ENST00000566549 PPARGC1BQ86YN6 1023 aaKnown RBP29.54■■■□□ 2.32
MSLN-207ENST00000566549 RUSC2Q8N2Y8 1516 aa29.53■■■□□ 2.32
MSLN-207ENST00000566549 CSRNP3Q8WYN3 585 aa29.45■■■□□ 2.3
MSLN-207ENST00000566549 SYNJ1O43426 1573 aa29.42■■■□□ 2.3
MSLN-207ENST00000566549 EEA1Q15075 1411 aa29.38■■■□□ 2.29
MSLN-207ENST00000566549 UBTFP17480 764 aaKnown RBP29.34■■■□□ 2.29
MSLN-207ENST00000566549 NCAPD3P42695 1498 aa29.31■■■□□ 2.28
MSLN-207ENST00000566549 CEP162Q5TB80 1403 aa29.31■■■□□ 2.28
MSLN-207ENST00000566549 TNIKQ9UKE5 1360 aa29.27■■■□□ 2.28
MSLN-207ENST00000566549 HMGXB3Q12766 1538 aa29.26■■■□□ 2.28
MSLN-207ENST00000566549 GOLGA3Q08378 1498 aa29.2■■■□□ 2.26
MSLN-207ENST00000566549 TTBK1Q5TCY1 1321 aaPredicted RBP29.19■■■□□ 2.26
MSLN-207ENST00000566549 CEP164Q9UPV0 1460 aa29.08■■■□□ 2.25
MSLN-207ENST00000566549 TOP2BQ02880 1626 aa29.07■■■□□ 2.24
MSLN-207ENST00000566549 KIF21BO75037 1637 aa28.98■■■□□ 2.23
MSLN-207ENST00000566549 CFTRP13569 1480 aa28.97■■■□□ 2.23
MSLN-207ENST00000566549 ZEB1P37275 1124 aaPredicted RBP28.96■■■□□ 2.23
MSLN-207ENST00000566549 RAPGEF2Q9Y4G8 1499 aa28.96■■■□□ 2.23
MSLN-207ENST00000566549 BIVM-ERCC5R4GMW8 1640 aa28.95■■■□□ 2.22
MSLN-207ENST00000566549 RANGAP1P46060 587 aaPredicted RBP28.94■■■□□ 2.22
MSLN-207ENST00000566549 CUX1P39880 1505 aa28.92■■■□□ 2.22
MSLN-207ENST00000566549 CLIP1P30622 1438 aa28.87■■■□□ 2.21
MSLN-207ENST00000566549 CC2D2AQ9P2K1 1620 aa28.82■■■□□ 2.2
MSLN-207ENST00000566549 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.82■■■□□ 2.2
MSLN-207ENST00000566549 CADPSQ9ULU8 1353 aa28.76■■■□□ 2.19
MSLN-207ENST00000566549 CCER1Q8TC90 406 aaPredicted RBP28.71■■■□□ 2.19
MSLN-207ENST00000566549 KIF27Q86VH2 1401 aa28.7■■■□□ 2.18
MSLN-207ENST00000566549 PRXQ9BXM0 1461 aa28.69■■■□□ 2.18
MSLN-207ENST00000566549 VPS8Q8N3P4 1428 aa28.67■■■□□ 2.18
MSLN-207ENST00000566549 ERICH3Q5RHP9 1530 aa28.61■■■□□ 2.17
MSLN-207ENST00000566549 PRDM2Q13029 1718 aa28.6■■■□□ 2.17
MSLN-207ENST00000566549 APLP2Q06481 763 aa28.58■■■□□ 2.17
MSLN-207ENST00000566549 CUX2O14529 1486 aa28.54■■■□□ 2.16
MSLN-207ENST00000566549 FGD5Q6ZNL6 1462 aa28.49■■■□□ 2.15
MSLN-207ENST00000566549 FANCD2Q9BXW9 1451 aa28.48■■■□□ 2.15
MSLN-207ENST00000566549 NESP48681 1621 aa28.44■■■□□ 2.14
MSLN-207ENST00000566549 ARAP1Q96P48 1450 aa28.44■■■□□ 2.14
MSLN-207ENST00000566549 HNRNPUL2Q1KMD3 747 aaKnown RBP28.43■■■□□ 2.14
MSLN-207ENST00000566549 IGF1RP08069 1367 aa28.42■■■□□ 2.14
MSLN-207ENST00000566549 CARMIL1Q5VZK9 1371 aa28.31■■■□□ 2.12
MSLN-207ENST00000566549 DNAJC5BQ9UF47 199 aa28.3■■■□□ 2.12
MSLN-207ENST00000566549 RAD54L2Q9Y4B4 1467 aa28.28■■■□□ 2.12
MSLN-207ENST00000566549 ARHGAP35Q9NRY4 1499 aa28.27■■■□□ 2.12
MSLN-207ENST00000566549 KANK4Q5T7N3 995 aaPredicted RBP28.27■■■□□ 2.12
MSLN-207ENST00000566549 DNMBPQ6XZF7 1577 aa28.24■■■□□ 2.11
MSLN-207ENST00000566549 TOPBP1Q92547 1522 aa28.23■■■□□ 2.11
MSLN-207ENST00000566549 POLA1P09884 1462 aaPredicted RBP28.21■■■□□ 2.11
MSLN-207ENST00000566549 ABCA10Q8WWZ4 1543 aa28.12■■■□□ 2.09
MSLN-207ENST00000566549 LAMC3Q9Y6N6 1575 aa28.11■■■□□ 2.09
MSLN-207ENST00000566549 URB2Q14146 1524 aaKnown RBP28.08■■■□□ 2.09
MSLN-207ENST00000566549 P3H3Q8IVL6 736 aa28.07■■■□□ 2.08
MSLN-207ENST00000566549 PDS5BQ9NTI5 1447 aa28■■■□□ 2.07
MSLN-207ENST00000566549 TDRD9Q8NDG6 1382 aaKnown RBP27.98■■■□□ 2.07
MSLN-207ENST00000566549 ATP1B4Q9UN42 357 aaPredicted RBP27.93■■■□□ 2.06
MSLN-207ENST00000566549 RRBP1Q9P2E9 1410 aaKnown RBP27.9■■■□□ 2.06
MSLN-207ENST00000566549 ITGAEP38570 1179 aa27.89■■■□□ 2.06
MSLN-207ENST00000566549 FHOD3Q2V2M9 1422 aa27.89■■■□□ 2.05
MSLN-207ENST00000566549 KIF21AQ7Z4S6 1674 aa27.87■■■□□ 2.05
MSLN-207ENST00000566549 CUL7Q14999 1698 aa27.86■■■□□ 2.05
MSLN-207ENST00000566549 CCNB3Q8WWL7 1395 aa27.86■■■□□ 2.05
MSLN-207ENST00000566549 TIAM1Q13009 1591 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms