RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 PELP1Q8IZL8 1130 aaKnown RBP23.09■■□□□ 1.29
CSPG4P12-202ENST00000559989 DCAF8L2P0C7V8 631 aa22.45■■□□□ 1.19
CSPG4P12-202ENST00000559989 ERICH6Q7L0X2 663 aa22.16■■□□□ 1.14
CSPG4P12-202ENST00000559989 CCER1Q8TC90 406 aaPredicted RBP22.01■■□□□ 1.11
CSPG4P12-202ENST00000559989 MYT1Q01538 1121 aa21.83■■□□□ 1.08
CSPG4P12-202ENST00000559989 APLP2Q06481 763 aa21.42■■□□□ 1.02
CSPG4P12-202ENST00000559989 CENPBP07199 599 aaPredicted RBP21.41■■□□□ 1.02
CSPG4P12-202ENST00000559989 SUPT5HO00267 1087 aaKnown RBP21.34■■□□□ 1.01
CSPG4P12-202ENST00000559989 FAM9AQ8IZU1 332 aaPredicted RBP21.26■□□□□ 0.99
CSPG4P12-202ENST00000559989 YTHDC1Q96MU7 727 aaKnown RBP21.22■□□□□ 0.99
CSPG4P12-202ENST00000559989 EHMT2Q96KQ7 1210 aa21.2■□□□□ 0.98
CSPG4P12-202ENST00000559989 NEFLP07196 543 aa21.14■□□□□ 0.97
CSPG4P12-202ENST00000559989 DAXXQ9UER7 740 aaPredicted RBP20.98■□□□□ 0.95
CSPG4P12-202ENST00000559989 ZEB1P37275 1124 aaPredicted RBP20.87■□□□□ 0.93
CSPG4P12-202ENST00000559989 TTBK1Q5TCY1 1321 aaPredicted RBP20.74■□□□□ 0.91
CSPG4P12-202ENST00000559989 PCGF6Q9BYE7 350 aa20.73■□□□□ 0.91
CSPG4P12-202ENST00000559989 SHROOM4Q9ULL8 1493 aa20.52■□□□□ 0.88
CSPG4P12-202ENST00000559989 RTL5Q5HYW3 569 aaPredicted RBP20.4■□□□□ 0.86
CSPG4P12-202ENST00000559989 ZNF316A6NFI3 1004 aaPredicted RBP20.39■□□□□ 0.85
CSPG4P12-202ENST00000559989 ATP1B4Q9UN42 357 aaPredicted RBP20.36■□□□□ 0.85
CSPG4P12-202ENST00000559989 RANGAP1P46060 587 aaPredicted RBP20.2■□□□□ 0.82
CSPG4P12-202ENST00000559989 CLSPNQ9HAW4 1339 aa20.09■□□□□ 0.81
CSPG4P12-202ENST00000559989 POLR3GLQ9BT43 218 aa19.96■□□□□ 0.79
CSPG4P12-202ENST00000559989 UBTFP17480 764 aaKnown RBP19.89■□□□□ 0.78
CSPG4P12-202ENST00000559989 TRIM41Q8WV44 630 aa19.81■□□□□ 0.76
CSPG4P12-202ENST00000559989 MYT1LQ9UL68 1186 aa19.8■□□□□ 0.76
CSPG4P12-202ENST00000559989 SLC4A1APQ9BWU0 796 aaKnown RBP19.78■□□□□ 0.76
CSPG4P12-202ENST00000559989 ZBTB47Q9UFB7 747 aaPredicted RBP19.73■□□□□ 0.75
CSPG4P12-202ENST00000559989 GLIPR1L2Q4G1C9 344 aa19.72■□□□□ 0.75
CSPG4P12-202ENST00000559989 CNGB1Q14028 1251 aaPredicted RBP19.63■□□□□ 0.73
CSPG4P12-202ENST00000559989 TRIM26Q12899 539 aaPredicted RBP19.56■□□□□ 0.72
CSPG4P12-202ENST00000559989 ANP32BQ92688 251 aaKnown RBP19.56■□□□□ 0.72
CSPG4P12-202ENST00000559989 CDK11AQ9UQ88 783 aaPredicted RBP19.56■□□□□ 0.72
CSPG4P12-202ENST00000559989 HRCP23327 699 aa19.52■□□□□ 0.72
CSPG4P12-202ENST00000559989 EIF5BO60841 1220 aaKnown RBP19.49■□□□□ 0.71
CSPG4P12-202ENST00000559989 ITGAEP38570 1179 aa19.44■□□□□ 0.7
CSPG4P12-202ENST00000559989 CHIC1Q5VXU3 224 aa19.44■□□□□ 0.7
CSPG4P12-202ENST00000559989 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.42■□□□□ 0.7
CSPG4P12-202ENST00000559989 HNRNPUL2Q1KMD3 747 aaKnown RBP19.42■□□□□ 0.7
CSPG4P12-202ENST00000559989 PPARGC1BQ86YN6 1023 aaKnown RBP19.4■□□□□ 0.7
CSPG4P12-202ENST00000559989 ANP32AP39687 249 aaKnown RBP19.35■□□□□ 0.69
CSPG4P12-202ENST00000559989 NISCHQ9Y2I1 1504 aa19.34■□□□□ 0.69
CSPG4P12-202ENST00000559989 CANXP27824 592 aaKnown RBP19.32■□□□□ 0.68
CSPG4P12-202ENST00000559989 DIEXFQ68CQ4 756 aaKnown RBP19.29■□□□□ 0.68
CSPG4P12-202ENST00000559989 SLC24A1O60721 1099 aa19.26■□□□□ 0.67
CSPG4P12-202ENST00000559989 BCANQ96GW7 911 aa19.22■□□□□ 0.67
CSPG4P12-202ENST00000559989 BCL11AQ9H165 835 aa19.2■□□□□ 0.66
CSPG4P12-202ENST00000559989 NEFMP07197 916 aa19.18■□□□□ 0.66
CSPG4P12-202ENST00000559989 HSP90AA1P07900 732 aaKnown RBP19.17■□□□□ 0.66
CSPG4P12-202ENST00000559989 ANP32CO43423 234 aa19.14■□□□□ 0.65
CSPG4P12-202ENST00000559989 CDK11BP21127 795 aaKnown RBP19.13■□□□□ 0.65
CSPG4P12-202ENST00000559989 GTF3C3Q9Y5Q9 886 aa19.07■□□□□ 0.64
CSPG4P12-202ENST00000559989 UPF2Q9HAU5 1272 aaKnown RBP19.05■□□□□ 0.64
CSPG4P12-202ENST00000559989 NPM2Q86SE8 214 aaKnown RBP19.04■□□□□ 0.64
CSPG4P12-202ENST00000559989 TNNT2P45379 298 aaPredicted RBP19.03■□□□□ 0.64
CSPG4P12-202ENST00000559989 TRIM52Q96A61 297 aa18.95■□□□□ 0.62
CSPG4P12-202ENST00000559989 FAM50AQ14320 339 aaKnown RBP18.89■□□□□ 0.61
CSPG4P12-202ENST00000559989 NEUROD1Q13562 356 aa18.87■□□□□ 0.61
CSPG4P12-202ENST00000559989 ZNF326Q5BKZ1 582 aaKnown RBP18.78■□□□□ 0.6
CSPG4P12-202ENST00000559989 TRIM44Q96DX7 344 aaPredicted RBP18.73■□□□□ 0.59
CSPG4P12-202ENST00000559989 ARXQ96QS3 562 aa18.73■□□□□ 0.59
CSPG4P12-202ENST00000559989 NBR1Q14596 966 aa18.72■□□□□ 0.59
CSPG4P12-202ENST00000559989 NCLP19338 710 aaKnown RBP18.65■□□□□ 0.58
CSPG4P12-202ENST00000559989 ANP32EQ9BTT0 268 aa18.64■□□□□ 0.57
CSPG4P12-202ENST00000559989 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.59■□□□□ 0.57
CSPG4P12-202ENST00000559989 ACIN1Q9UKV3 1341 aaKnown RBP18.57■□□□□ 0.56
CSPG4P12-202ENST00000559989 FKBP8Q14318 412 aa18.55■□□□□ 0.56
CSPG4P12-202ENST00000559989 DNTTIP2Q5QJE6 756 aaKnown RBP18.54■□□□□ 0.56
CSPG4P12-202ENST00000559989 ZRSR1Q15695 479 aaKnown RBP18.53■□□□□ 0.56
CSPG4P12-202ENST00000559989 LOC105371045A0A1W2PR82 267 aa18.53■□□□□ 0.56
CSPG4P12-202ENST00000559989 GOLGA6L22H0YM25 854 aa18.52■□□□□ 0.56
CSPG4P12-202ENST00000559989 PTMAP06454 111 aaKnown RBP18.51■□□□□ 0.55
CSPG4P12-202ENST00000559989 BECN1Q14457 450 aa18.51■□□□□ 0.55
CSPG4P12-202ENST00000559989 DDRGK1Q96HY6 314 aa18.5■□□□□ 0.55
CSPG4P12-202ENST00000559989 MYH16Q9H6N6 1097 aa18.49■□□□□ 0.55
CSPG4P12-202ENST00000559989 CCDC136Q96JN2 1154 aa18.45■□□□□ 0.54
CSPG4P12-202ENST00000559989 GOLGA6L6A8MZA4 724 aa18.41■□□□□ 0.54
CSPG4P12-202ENST00000559989 NAP1L5Q96NT1 182 aaPredicted RBP18.4■□□□□ 0.54
CSPG4P12-202ENST00000559989 ERICH6BQ5W0A0 696 aa18.38■□□□□ 0.53
CSPG4P12-202ENST00000559989 HNRNPUQ00839 825 aaKnown RBP eCLIP18.33■□□□□ 0.52
CSPG4P12-202ENST00000559989 TULP1O00294 542 aaPredicted RBP18.31■□□□□ 0.52
CSPG4P12-202ENST00000559989 CASC1Q6TDU7 716 aa18.29■□□□□ 0.52
CSPG4P12-202ENST00000559989 ESF1Q9H501 851 aaKnown RBP18.29■□□□□ 0.52
CSPG4P12-202ENST00000559989 NRDCO43847 1150 aa18.28■□□□□ 0.52
CSPG4P12-202ENST00000559989 WDR43Q15061 677 aaKnown RBP eCLIP18.27■□□□□ 0.52
CSPG4P12-202ENST00000559989 CHAF1AQ13111 956 aaPredicted RBP18.26■□□□□ 0.51
CSPG4P12-202ENST00000559989 FAM9BQ8IZU0 186 aa18.26■□□□□ 0.51
CSPG4P12-202ENST00000559989 STAG3Q9UJ98 1225 aa18.25■□□□□ 0.51
CSPG4P12-202ENST00000559989 L1TD1Q5T7N2 865 aaKnown RBP18.24■□□□□ 0.51
CSPG4P12-202ENST00000559989 AMER1Q5JTC6 1135 aaPredicted RBP18.24■□□□□ 0.51
CSPG4P12-202ENST00000559989 TMC1Q8TDI8 760 aa18.22■□□□□ 0.51
CSPG4P12-202ENST00000559989 SALL2Q9Y467 1007 aaPredicted RBP18.2■□□□□ 0.5
CSPG4P12-202ENST00000559989 TONSLQ96HA7 1378 aa18.15■□□□□ 0.5
CSPG4P12-202ENST00000559989 PPM1GO15355 546 aaPredicted RBP18.13■□□□□ 0.49
CSPG4P12-202ENST00000559989 PLCB2Q00722 1185 aa18.12■□□□□ 0.49
CSPG4P12-202ENST00000559989 TPRNQ4KMQ1 711 aa18.11■□□□□ 0.49
CSPG4P12-202ENST00000559989 CHGAP10645 457 aaKnown RBP18.1■□□□□ 0.49
CSPG4P12-202ENST00000559989 A0A0G2JS52 829 aa18.09■□□□□ 0.49
CSPG4P12-202ENST00000559989 MSNP26038 577 aaKnown RBP18.08■□□□□ 0.49
CSPG4P12-202ENST00000559989 SCAF1Q9H7N4 1312 aaKnown RBP18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 168.9 ms