RNA–Protein interactions for RNA: ENST00000373010.5

USP49-202, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 5 BASIC

Gene USP49, Length 2,446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-202ENST00000373010 NISCHQ9Y2I1 1504 aa40.14■■■■■ 4.02
USP49-202ENST00000373010 CCDC180Q9P1Z9 1646 aa34.41■■■■□ 3.1
USP49-202ENST00000373010 ZCCHC6Q5VYS8 1495 aaKnown RBP33.88■■■■□ 3.01
USP49-202ENST00000373010 SHROOM4Q9ULL8 1493 aa33.8■■■■□ 3
USP49-202ENST00000373010 DCAF8L2P0C7V8 631 aa33.27■■■□□ 2.92
USP49-202ENST00000373010 DCAF1Q9Y4B6 1507 aa32.98■■■□□ 2.87
USP49-202ENST00000373010 SUPT5HO00267 1087 aaKnown RBP32.93■■■□□ 2.86
USP49-202ENST00000373010 MYO15BQ96JP2 1530 aa32.19■■■□□ 2.74
USP49-202ENST00000373010 ABCC9O60706 1549 aa32.12■■■□□ 2.73
USP49-202ENST00000373010 SCRIBQ14160 1630 aa32.1■■■□□ 2.73
USP49-202ENST00000373010 NACADO15069 1562 aa31.88■■■□□ 2.69
USP49-202ENST00000373010 CHIC1Q5VXU3 224 aa31.86■■■□□ 2.69
USP49-202ENST00000373010 RSF1Q96T23 1441 aaPredicted RBP31.57■■■□□ 2.64
USP49-202ENST00000373010 RB1CC1Q8TDY2 1594 aa31.44■■■□□ 2.62
USP49-202ENST00000373010 CECR2Q9BXF3 1484 aa31.31■■■□□ 2.6
USP49-202ENST00000373010 MROH2BQ7Z745 1585 aa31.17■■■□□ 2.58
USP49-202ENST00000373010 UNC13AQ9UPW8 1703 aa31.01■■■□□ 2.55
USP49-202ENST00000373010 WIZO95785 1651 aa31■■■□□ 2.55
USP49-202ENST00000373010 BAZ1AQ9NRL2 1556 aaPredicted RBP30.87■■■□□ 2.53
USP49-202ENST00000373010 LOC105371045A0A1W2PR82 267 aa30.86■■■□□ 2.53
USP49-202ENST00000373010 TRIM41Q8WV44 630 aa30.74■■■□□ 2.51
USP49-202ENST00000373010 SMARCA4P51532 1647 aa30.68■■■□□ 2.5
USP49-202ENST00000373010 BICRAQ9NZM4 1560 aa30.6■■■□□ 2.49
USP49-202ENST00000373010 PABPN1Q86U42 306 aaKnown RBP eCLIP30.58■■■□□ 2.49
USP49-202ENST00000373010 TOP2AP11388 1531 aaKnown RBP30.52■■■□□ 2.48
USP49-202ENST00000373010 FAM9AQ8IZU1 332 aaPredicted RBP30.43■■■□□ 2.46
USP49-202ENST00000373010 EIF4G1Q04637 1599 aaKnown RBP30.42■■■□□ 2.46
USP49-202ENST00000373010 PCGF6Q9BYE7 350 aa30.37■■■□□ 2.45
USP49-202ENST00000373010 CCDC88BA6NC98 1476 aa30.35■■■□□ 2.45
USP49-202ENST00000373010 SMARCA2P51531 1590 aa30.34■■■□□ 2.45
USP49-202ENST00000373010 EHMT2Q96KQ7 1210 aa30.15■■■□□ 2.42
USP49-202ENST00000373010 PEG3Q9GZU2 1588 aa30.13■■■□□ 2.41
USP49-202ENST00000373010 ABCC8Q09428 1581 aa30.12■■■□□ 2.41
USP49-202ENST00000373010 HRCP23327 699 aa30.1■■■□□ 2.41
USP49-202ENST00000373010 ATAD2BQ9ULI0 1458 aa29.97■■■□□ 2.39
USP49-202ENST00000373010 TRIM26Q12899 539 aaPredicted RBP29.94■■■□□ 2.38
USP49-202ENST00000373010 BAZ1BQ9UIG0 1483 aaKnown RBP29.86■■■□□ 2.37
USP49-202ENST00000373010 SOGA1O94964 1423 aa29.73■■■□□ 2.35
USP49-202ENST00000373010 WRNQ14191 1432 aaPredicted RBP eCLIP29.67■■■□□ 2.34
USP49-202ENST00000373010 RUSC2Q8N2Y8 1516 aa29.62■■■□□ 2.33
USP49-202ENST00000373010 SYNJ1O43426 1573 aa29.57■■■□□ 2.32
USP49-202ENST00000373010 EEA1Q15075 1411 aa29.55■■■□□ 2.32
USP49-202ENST00000373010 PPARGC1BQ86YN6 1023 aaKnown RBP29.53■■■□□ 2.32
USP49-202ENST00000373010 CSRNP3Q8WYN3 585 aa29.52■■■□□ 2.32
USP49-202ENST00000373010 NCAPD3P42695 1498 aa29.47■■■□□ 2.31
USP49-202ENST00000373010 HMGXB3Q12766 1538 aa29.46■■■□□ 2.31
USP49-202ENST00000373010 TNIKQ9UKE5 1360 aa29.4■■■□□ 2.3
USP49-202ENST00000373010 CEP162Q5TB80 1403 aa29.4■■■□□ 2.3
USP49-202ENST00000373010 UBTFP17480 764 aaKnown RBP29.33■■■□□ 2.29
USP49-202ENST00000373010 GOLGA3Q08378 1498 aa29.31■■■□□ 2.28
USP49-202ENST00000373010 TOP2BQ02880 1626 aa29.26■■■□□ 2.27
USP49-202ENST00000373010 KIF21BO75037 1637 aa29.2■■■□□ 2.26
USP49-202ENST00000373010 CEP164Q9UPV0 1460 aa29.2■■■□□ 2.26
USP49-202ENST00000373010 BIVM-ERCC5R4GMW8 1640 aa29.19■■■□□ 2.26
USP49-202ENST00000373010 CFTRP13569 1480 aa29.11■■■□□ 2.25
USP49-202ENST00000373010 ZEB1P37275 1124 aaPredicted RBP29.08■■■□□ 2.25
USP49-202ENST00000373010 TTBK1Q5TCY1 1321 aaPredicted RBP29.07■■■□□ 2.24
USP49-202ENST00000373010 CUX1P39880 1505 aa29.06■■■□□ 2.24
USP49-202ENST00000373010 RAPGEF2Q9Y4G8 1499 aa29.04■■■□□ 2.24
USP49-202ENST00000373010 CC2D2AQ9P2K1 1620 aa28.97■■■□□ 2.23
USP49-202ENST00000373010 CLIP1P30622 1438 aa28.95■■■□□ 2.22
USP49-202ENST00000373010 PRDM2Q13029 1718 aa28.94■■■□□ 2.22
USP49-202ENST00000373010 CADPSQ9ULU8 1353 aa28.85■■■□□ 2.21
USP49-202ENST00000373010 RANGAP1P46060 587 aaPredicted RBP28.83■■■□□ 2.21
USP49-202ENST00000373010 PRXQ9BXM0 1461 aa28.83■■■□□ 2.21
USP49-202ENST00000373010 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.81■■■□□ 2.2
USP49-202ENST00000373010 ERICH3Q5RHP9 1530 aa28.8■■■□□ 2.2
USP49-202ENST00000373010 KIF27Q86VH2 1401 aa28.79■■■□□ 2.2
USP49-202ENST00000373010 VPS8Q8N3P4 1428 aa28.77■■■□□ 2.2
USP49-202ENST00000373010 CCER1Q8TC90 406 aaPredicted RBP28.71■■■□□ 2.19
USP49-202ENST00000373010 CUX2O14529 1486 aa28.61■■■□□ 2.17
USP49-202ENST00000373010 FGD5Q6ZNL6 1462 aa28.6■■■□□ 2.17
USP49-202ENST00000373010 FANCD2Q9BXW9 1451 aa28.58■■■□□ 2.17
USP49-202ENST00000373010 APLP2Q06481 763 aa28.58■■■□□ 2.17
USP49-202ENST00000373010 ARAP1Q96P48 1450 aa28.56■■■□□ 2.16
USP49-202ENST00000373010 IGF1RP08069 1367 aa28.52■■■□□ 2.16
USP49-202ENST00000373010 NESP48681 1621 aa28.51■■■□□ 2.15
USP49-202ENST00000373010 HNRNPUL2Q1KMD3 747 aaKnown RBP28.41■■■□□ 2.14
USP49-202ENST00000373010 DNMBPQ6XZF7 1577 aa28.41■■■□□ 2.14
USP49-202ENST00000373010 CARMIL1Q5VZK9 1371 aa28.38■■■□□ 2.13
USP49-202ENST00000373010 ARHGAP35Q9NRY4 1499 aa28.38■■■□□ 2.13
USP49-202ENST00000373010 TOPBP1Q92547 1522 aa28.37■■■□□ 2.13
USP49-202ENST00000373010 RAD54L2Q9Y4B4 1467 aa28.35■■■□□ 2.13
USP49-202ENST00000373010 POLA1P09884 1462 aaPredicted RBP28.31■■■□□ 2.12
USP49-202ENST00000373010 KANK4Q5T7N3 995 aaPredicted RBP28.3■■■□□ 2.12
USP49-202ENST00000373010 LAMC3Q9Y6N6 1575 aa28.3■■■□□ 2.12
USP49-202ENST00000373010 DNAJC5BQ9UF47 199 aa28.28■■■□□ 2.12
USP49-202ENST00000373010 ABCA10Q8WWZ4 1543 aa28.27■■■□□ 2.12
USP49-202ENST00000373010 URB2Q14146 1524 aaKnown RBP28.21■■■□□ 2.11
USP49-202ENST00000373010 PDS5BQ9NTI5 1447 aa28.09■■■□□ 2.09
USP49-202ENST00000373010 WDR97A6NE52 1622 aa28.09■■■□□ 2.09
USP49-202ENST00000373010 CUL7Q14999 1698 aa28.07■■■□□ 2.08
USP49-202ENST00000373010 KIF21AQ7Z4S6 1674 aa28.07■■■□□ 2.08
USP49-202ENST00000373010 RRBP1Q9P2E9 1410 aaKnown RBP28.04■■■□□ 2.08
USP49-202ENST00000373010 P3H3Q8IVL6 736 aa28.03■■■□□ 2.08
USP49-202ENST00000373010 TIAM1Q13009 1591 aa28.01■■■□□ 2.08
USP49-202ENST00000373010 TDRD9Q8NDG6 1382 aaKnown RBP28■■■□□ 2.07
USP49-202ENST00000373010 ABCA5Q8WWZ7 1642 aa27.98■■■□□ 2.07
USP49-202ENST00000373010 CTTNBP2Q8WZ74 1663 aa27.96■■■□□ 2.07
USP49-202ENST00000373010 MAP3K1Q13233 1512 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms