RNA–Protein interactions for RNA: ENST00000321027.7

GCFC2-201, Transcript of GC-rich sequence DNA-binding factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GCFC2, Length 4,440 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCFC2-201ENST00000321027 NISCHQ9Y2I1 1504 aa28.04■■■□□ 2.08
GCFC2-201ENST00000321027 DCAF8L2P0C7V8 631 aa27.02■■□□□ 1.92
GCFC2-201ENST00000321027 SUPT5HO00267 1087 aaKnown RBP26.1■■□□□ 1.77
GCFC2-201ENST00000321027 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
GCFC2-201ENST00000321027 EHMT2Q96KQ7 1210 aa24.9■■□□□ 1.58
GCFC2-201ENST00000321027 PCGF6Q9BYE7 350 aa24.74■■□□□ 1.55
GCFC2-201ENST00000321027 FAM9AQ8IZU1 332 aaPredicted RBP24.48■■□□□ 1.51
GCFC2-201ENST00000321027 TTBK1Q5TCY1 1321 aaPredicted RBP24.08■■□□□ 1.45
GCFC2-201ENST00000321027 TRIM41Q8WV44 630 aa24.04■■□□□ 1.44
GCFC2-201ENST00000321027 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
GCFC2-201ENST00000321027 HRCP23327 699 aa23.92■■□□□ 1.42
GCFC2-201ENST00000321027 LOC105371045A0A1W2PR82 267 aa23.88■■□□□ 1.41
GCFC2-201ENST00000321027 APLP2Q06481 763 aa23.75■■□□□ 1.39
GCFC2-201ENST00000321027 PPARGC1BQ86YN6 1023 aaKnown RBP23.73■■□□□ 1.39
GCFC2-201ENST00000321027 ZEB1P37275 1124 aaPredicted RBP23.73■■□□□ 1.39
GCFC2-201ENST00000321027 PELP1Q8IZL8 1130 aaKnown RBP23.7■■□□□ 1.38
GCFC2-201ENST00000321027 ABCC9O60706 1549 aa23.69■■□□□ 1.38
GCFC2-201ENST00000321027 CCER1Q8TC90 406 aaPredicted RBP23.69■■□□□ 1.38
GCFC2-201ENST00000321027 TRIM26Q12899 539 aaPredicted RBP23.65■■□□□ 1.38
GCFC2-201ENST00000321027 RANGAP1P46060 587 aaPredicted RBP23.57■■□□□ 1.36
GCFC2-201ENST00000321027 UBTFP17480 764 aaKnown RBP23.45■■□□□ 1.34
GCFC2-201ENST00000321027 CENPBP07199 599 aaPredicted RBP23.38■■□□□ 1.33
GCFC2-201ENST00000321027 ZCCHC6Q5VYS8 1495 aaKnown RBP23.33■■□□□ 1.33
GCFC2-201ENST00000321027 PABPN1Q86U42 306 aaKnown RBP eCLIP23.29■■□□□ 1.32
GCFC2-201ENST00000321027 YTHDC1Q96MU7 727 aaKnown RBP23.21■■□□□ 1.31
GCFC2-201ENST00000321027 CCDC180Q9P1Z9 1646 aa23.15■■□□□ 1.3
GCFC2-201ENST00000321027 ATP1B4Q9UN42 357 aaPredicted RBP23.08■■□□□ 1.29
GCFC2-201ENST00000321027 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.05■■□□□ 1.28
GCFC2-201ENST00000321027 HNRNPUL2Q1KMD3 747 aaKnown RBP22.9■■□□□ 1.26
GCFC2-201ENST00000321027 SCRIBQ14160 1630 aa22.89■■□□□ 1.26
GCFC2-201ENST00000321027 ERICH6Q7L0X2 663 aa22.83■■□□□ 1.25
GCFC2-201ENST00000321027 DIEXFQ68CQ4 756 aaKnown RBP22.74■■□□□ 1.23
GCFC2-201ENST00000321027 ITGAEP38570 1179 aa22.73■■□□□ 1.23
GCFC2-201ENST00000321027 MYO15BQ96JP2 1530 aa22.68■■□□□ 1.22
GCFC2-201ENST00000321027 NEFLP07196 543 aa22.62■■□□□ 1.21
GCFC2-201ENST00000321027 DCAF1Q9Y4B6 1507 aa22.5■■□□□ 1.19
GCFC2-201ENST00000321027 GTF3C3Q9Y5Q9 886 aa22.46■■□□□ 1.19
GCFC2-201ENST00000321027 RSF1Q96T23 1441 aaPredicted RBP22.39■■□□□ 1.17
GCFC2-201ENST00000321027 CSRNP3Q8WYN3 585 aa22.39■■□□□ 1.17
GCFC2-201ENST00000321027 RB1CC1Q8TDY2 1594 aa22.3■■□□□ 1.16
GCFC2-201ENST00000321027 MYT1Q01538 1121 aa22.29■■□□□ 1.16
GCFC2-201ENST00000321027 NACADO15069 1562 aa22.27■■□□□ 1.16
GCFC2-201ENST00000321027 ACIN1Q9UKV3 1341 aaKnown RBP22.27■■□□□ 1.16
GCFC2-201ENST00000321027 ZNF316A6NFI3 1004 aaPredicted RBP22.25■■□□□ 1.15
GCFC2-201ENST00000321027 POLR3GLQ9BT43 218 aa22.18■■□□□ 1.14
GCFC2-201ENST00000321027 CNGB1Q14028 1251 aaPredicted RBP22.16■■□□□ 1.14
GCFC2-201ENST00000321027 FAM50AQ14320 339 aaKnown RBP22.11■■□□□ 1.13
GCFC2-201ENST00000321027 CECR2Q9BXF3 1484 aa22.1■■□□□ 1.13
GCFC2-201ENST00000321027 NEUROD1Q13562 356 aa22.07■■□□□ 1.12
GCFC2-201ENST00000321027 SCAF1Q9H7N4 1312 aaKnown RBP22.06■■□□□ 1.12
GCFC2-201ENST00000321027 P3H3Q8IVL6 736 aa22.03■■□□□ 1.12
GCFC2-201ENST00000321027 BCANQ96GW7 911 aa21.99■■□□□ 1.11
GCFC2-201ENST00000321027 FBLN2P98095 1184 aa21.89■■□□□ 1.1
GCFC2-201ENST00000321027 MYT1LQ9UL68 1186 aa21.89■■□□□ 1.09
GCFC2-201ENST00000321027 BAZ1AQ9NRL2 1556 aaPredicted RBP21.86■■□□□ 1.09
GCFC2-201ENST00000321027 DAXXQ9UER7 740 aaPredicted RBP21.84■■□□□ 1.09
GCFC2-201ENST00000321027 MROH2BQ7Z745 1585 aa21.8■■□□□ 1.08
GCFC2-201ENST00000321027 ARID3CA6NKF2 412 aa21.79■■□□□ 1.08
GCFC2-201ENST00000321027 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.08
GCFC2-201ENST00000321027 TRIM52Q96A61 297 aa21.76■■□□□ 1.07
GCFC2-201ENST00000321027 MIER1Q8N108 512 aa21.75■■□□□ 1.07
GCFC2-201ENST00000321027 WRNQ14191 1432 aaPredicted RBP eCLIP21.74■■□□□ 1.07
GCFC2-201ENST00000321027 ANP32CO43423 234 aa21.71■■□□□ 1.07
GCFC2-201ENST00000321027 CEP162Q5TB80 1403 aa21.66■■□□□ 1.06
GCFC2-201ENST00000321027 CLIP1P30622 1438 aa21.64■■□□□ 1.06
GCFC2-201ENST00000321027 EEA1Q15075 1411 aa21.63■■□□□ 1.05
GCFC2-201ENST00000321027 DDX10Q13206 875 aaKnown RBP21.58■■□□□ 1.04
GCFC2-201ENST00000321027 SLC4A1APQ9BWU0 796 aaKnown RBP21.57■■□□□ 1.04
GCFC2-201ENST00000321027 GOLGA3Q08378 1498 aa21.56■■□□□ 1.04
GCFC2-201ENST00000321027 CCDC88BA6NC98 1476 aa21.54■■□□□ 1.04
GCFC2-201ENST00000321027 ZNF326Q5BKZ1 582 aaKnown RBP21.54■■□□□ 1.04
GCFC2-201ENST00000321027 SOGA1O94964 1423 aa21.51■■□□□ 1.03
GCFC2-201ENST00000321027 FKBP8Q14318 412 aa21.5■■□□□ 1.03
GCFC2-201ENST00000321027 TNIKQ9UKE5 1360 aa21.5■■□□□ 1.03
GCFC2-201ENST00000321027 CLSPNQ9HAW4 1339 aa21.49■■□□□ 1.03
GCFC2-201ENST00000321027 WIZO95785 1651 aa21.48■■□□□ 1.03
GCFC2-201ENST00000321027 RTL5Q5HYW3 569 aaPredicted RBP21.47■■□□□ 1.03
GCFC2-201ENST00000321027 HIRIP3Q9BW71 556 aaPredicted RBP21.45■■□□□ 1.02
GCFC2-201ENST00000321027 ZNF777Q9ULD5 760 aaPredicted RBP21.45■■□□□ 1.02
GCFC2-201ENST00000321027 ABCC8Q09428 1581 aa21.43■■□□□ 1.02
GCFC2-201ENST00000321027 KIF27Q86VH2 1401 aa21.41■■□□□ 1.02
GCFC2-201ENST00000321027 CEP164Q9UPV0 1460 aa21.41■■□□□ 1.02
GCFC2-201ENST00000321027 CDK11AQ9UQ88 783 aaPredicted RBP21.41■■□□□ 1.02
GCFC2-201ENST00000321027 TONSLQ96HA7 1378 aa21.34■■□□□ 1.01
GCFC2-201ENST00000321027 HNRNPUQ00839 825 aaKnown RBP eCLIP21.32■■□□□ 1
GCFC2-201ENST00000321027 CHIC2Q9UKJ5 165 aa21.3■■□□□ 1
GCFC2-201ENST00000321027 TOP2AP11388 1531 aaKnown RBP21.3■■□□□ 1
GCFC2-201ENST00000321027 MTUS2Q5JR59 1369 aa21.3■■□□□ 1
GCFC2-201ENST00000321027 SMARCA2P51531 1590 aa21.26■□□□□ 0.99
GCFC2-201ENST00000321027 CHMP7Q8WUX9 453 aaPredicted RBP21.26■□□□□ 0.99
GCFC2-201ENST00000321027 FAM9BQ8IZU0 186 aa21.21■□□□□ 0.99
GCFC2-201ENST00000321027 SMARCA4P51532 1647 aa21.19■□□□□ 0.98
GCFC2-201ENST00000321027 CUX2O14529 1486 aa21.18■□□□□ 0.98
GCFC2-201ENST00000321027 ATAD2BQ9ULI0 1458 aa21.18■□□□□ 0.98
GCFC2-201ENST00000321027 IRX6P78412 446 aaPredicted RBP21.16■□□□□ 0.98
GCFC2-201ENST00000321027 CARMIL1Q5VZK9 1371 aa21.14■□□□□ 0.97
GCFC2-201ENST00000321027 SIN3AQ96ST3 1273 aa21.12■□□□□ 0.97
GCFC2-201ENST00000321027 RRP7BPQ9NSQ0 103 aa21.08■□□□□ 0.96
GCFC2-201ENST00000321027 BCL11AQ9H165 835 aa21.05■□□□□ 0.96
GCFC2-201ENST00000321027 KANK4Q5T7N3 995 aaPredicted RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms