Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.37■■□□□ 1.33
DEPDC4Q8N2C3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.37■■□□□ 1.33
DEPDC4Q8N2C3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
DEPDC4Q8N2C3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
DEPDC4Q8N2C3 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
DEPDC4Q8N2C3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
DEPDC4Q8N2C3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.35■■□□□ 1.33
DEPDC4Q8N2C3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
DEPDC4Q8N2C3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
DEPDC4Q8N2C3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
DEPDC4Q8N2C3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
DEPDC4Q8N2C3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
DEPDC4Q8N2C3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
DEPDC4Q8N2C3 DUX4L28-201ENST00000623687 678 ntBASIC23.33■■□□□ 1.33
DEPDC4Q8N2C3 AC044849.2-201ENST00000606596 710 ntBASIC23.32■■□□□ 1.32
DEPDC4Q8N2C3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.32■■□□□ 1.32
DEPDC4Q8N2C3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DEPDC4Q8N2C3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DEPDC4Q8N2C3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DEPDC4Q8N2C3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DEPDC4Q8N2C3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.31■■□□□ 1.32
DEPDC4Q8N2C3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.31■■□□□ 1.32
DEPDC4Q8N2C3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DEPDC4Q8N2C3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.3■■□□□ 1.32
DEPDC4Q8N2C3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
DEPDC4Q8N2C3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
DEPDC4Q8N2C3 AC087741.3-201ENST00000624270 1347 ntBASIC23.3■■□□□ 1.32
DEPDC4Q8N2C3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.29■■□□□ 1.32
DEPDC4Q8N2C3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.29■■□□□ 1.32
DEPDC4Q8N2C3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
DEPDC4Q8N2C3 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
DEPDC4Q8N2C3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
DEPDC4Q8N2C3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DEPDC4Q8N2C3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
DEPDC4Q8N2C3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.28■■□□□ 1.32
DEPDC4Q8N2C3 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DEPDC4Q8N2C3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
DEPDC4Q8N2C3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.28■■□□□ 1.32
DEPDC4Q8N2C3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DEPDC4Q8N2C3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.28■■□□□ 1.32
DEPDC4Q8N2C3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
DEPDC4Q8N2C3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DEPDC4Q8N2C3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DEPDC4Q8N2C3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
DEPDC4Q8N2C3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.26■■□□□ 1.31
DEPDC4Q8N2C3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
DEPDC4Q8N2C3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
DEPDC4Q8N2C3 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DEPDC4Q8N2C3 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
DEPDC4Q8N2C3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
DEPDC4Q8N2C3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.25■■□□□ 1.31
DEPDC4Q8N2C3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DEPDC4Q8N2C3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.24■■□□□ 1.31
DEPDC4Q8N2C3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
DEPDC4Q8N2C3 AL449106.1-201ENST00000608517 1980 ntBASIC23.24■■□□□ 1.31
DEPDC4Q8N2C3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
DEPDC4Q8N2C3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
DEPDC4Q8N2C3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.23■■□□□ 1.31
DEPDC4Q8N2C3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.23■■□□□ 1.31
DEPDC4Q8N2C3 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
DEPDC4Q8N2C3 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.22■■□□□ 1.31
DEPDC4Q8N2C3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.22■■□□□ 1.31
DEPDC4Q8N2C3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
DEPDC4Q8N2C3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
DEPDC4Q8N2C3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
DEPDC4Q8N2C3 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
DEPDC4Q8N2C3 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
DEPDC4Q8N2C3 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
DEPDC4Q8N2C3 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
DEPDC4Q8N2C3 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
DEPDC4Q8N2C3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
DEPDC4Q8N2C3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
DEPDC4Q8N2C3 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
DEPDC4Q8N2C3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.2■■□□□ 1.3
DEPDC4Q8N2C3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC23.2■■□□□ 1.3
DEPDC4Q8N2C3 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
DEPDC4Q8N2C3 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
DEPDC4Q8N2C3 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
DEPDC4Q8N2C3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DEPDC4Q8N2C3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
DEPDC4Q8N2C3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DEPDC4Q8N2C3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DEPDC4Q8N2C3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
DEPDC4Q8N2C3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DEPDC4Q8N2C3 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.18■■□□□ 1.3
DEPDC4Q8N2C3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
DEPDC4Q8N2C3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
DEPDC4Q8N2C3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
DEPDC4Q8N2C3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
DEPDC4Q8N2C3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
DEPDC4Q8N2C3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms