Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 AL121749.1-202ENST00000609313 2153 ntBASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.7■□□□□ 0.91
PDLIM3Q53GG5 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM3Q53GG5 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM3Q53GG5 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM3Q53GG5 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM3Q53GG5 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 BX255925.1-201ENST00000566954 1854 ntBASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.64■□□□□ 0.9
PDLIM3Q53GG5 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM3Q53GG5 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM3Q53GG5 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.64■□□□□ 0.89
PDLIM3Q53GG5 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM3Q53GG5 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM3Q53GG5 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM3Q53GG5 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM3Q53GG5 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM3Q53GG5 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 AC021231.2-201ENST00000594613 730 ntBASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM3Q53GG5 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.6■□□□□ 0.89
PDLIM3Q53GG5 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM3Q53GG5 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.58■□□□□ 0.89
PDLIM3Q53GG5 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms