Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 AL121749.1-202ENST00000609313 2153 ntBASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM3Q53GG5 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
PDLIM3Q53GG5 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM3Q53GG5 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM3Q53GG5 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.7■□□□□ 0.91
PDLIM3Q53GG5 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM3Q53GG5 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM3Q53GG5 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM3Q53GG5 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM3Q53GG5 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 BX255925.1-201ENST00000566954 1854 ntBASIC20.69■□□□□ 0.9
PDLIM3Q53GG5 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM3Q53GG5 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.67■□□□□ 0.9
PDLIM3Q53GG5 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PDLIM3Q53GG5 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.65■□□□□ 0.9
PDLIM3Q53GG5 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.64■□□□□ 0.9
PDLIM3Q53GG5 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM3Q53GG5 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM3Q53GG5 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.64■□□□□ 0.89
PDLIM3Q53GG5 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM3Q53GG5 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM3Q53GG5 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM3Q53GG5 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM3Q53GG5 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM3Q53GG5 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM3Q53GG5 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 AC021231.2-201ENST00000594613 730 ntBASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM3Q53GG5 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM3Q53GG5 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.6■□□□□ 0.89
PDLIM3Q53GG5 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM3Q53GG5 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PDLIM3Q53GG5 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.58■□□□□ 0.89
PDLIM3Q53GG5 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms