Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BX255925.1-201ENST00000566954 1854 ntBASIC30.07■■■□□ 2.4
HMGB1P09429 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
HMGB1P09429 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
HMGB1P09429 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
HMGB1P09429 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
HMGB1P09429 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
HMGB1P09429 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.05■■■□□ 2.4
HMGB1P09429 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
HMGB1P09429 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
HMGB1P09429 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.04■■■□□ 2.4
HMGB1P09429 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.04■■■□□ 2.4
HMGB1P09429 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.04■■■□□ 2.4
HMGB1P09429 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
HMGB1P09429 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
HMGB1P09429 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
HMGB1P09429 LINC01003-201ENST00000564834 1764 ntBASIC30.03■■■□□ 2.4
HMGB1P09429 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
HMGB1P09429 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
HMGB1P09429 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
HMGB1P09429 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
HMGB1P09429 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.02■■■□□ 2.4
HMGB1P09429 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
HMGB1P09429 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
HMGB1P09429 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
HMGB1P09429 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.99■■■□□ 2.39
HMGB1P09429 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
HMGB1P09429 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
HMGB1P09429 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
HMGB1P09429 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC29.99■■■□□ 2.39
HMGB1P09429 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC29.98■■■□□ 2.39
HMGB1P09429 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC29.98■■■□□ 2.39
HMGB1P09429 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.97■■■□□ 2.39
HMGB1P09429 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
HMGB1P09429 AC018358.1-201ENST00000631079 1402 ntBASIC29.96■■■□□ 2.39
HMGB1P09429 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.96■■■□□ 2.39
HMGB1P09429 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.96■■■□□ 2.39
HMGB1P09429 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
HMGB1P09429 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
HMGB1P09429 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.94■■■□□ 2.38
HMGB1P09429 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.94■■■□□ 2.38
HMGB1P09429 LINC01971-201ENST00000617888 1048 ntBASIC29.94■■■□□ 2.38
HMGB1P09429 AC110285.7-201ENST00000624417 1536 ntBASIC29.94■■■□□ 2.38
HMGB1P09429 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
HMGB1P09429 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
HMGB1P09429 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
HMGB1P09429 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC29.92■■■□□ 2.38
HMGB1P09429 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
HMGB1P09429 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
HMGB1P09429 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC29.92■■■□□ 2.38
HMGB1P09429 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.92■■■□□ 2.38
HMGB1P09429 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
HMGB1P09429 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
HMGB1P09429 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
HMGB1P09429 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
HMGB1P09429 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
HMGB1P09429 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
HMGB1P09429 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
HMGB1P09429 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
HMGB1P09429 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
HMGB1P09429 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
HMGB1P09429 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
HMGB1P09429 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
HMGB1P09429 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.89■■■□□ 2.38
HMGB1P09429 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.89■■■□□ 2.38
HMGB1P09429 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.89■■■□□ 2.38
HMGB1P09429 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
HMGB1P09429 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
HMGB1P09429 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.88■■■□□ 2.37
HMGB1P09429 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC29.87■■■□□ 2.37
HMGB1P09429 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.87■■■□□ 2.37
HMGB1P09429 PEX7-203ENST00000541292 945 ntTSL 5 BASIC29.87■■■□□ 2.37
HMGB1P09429 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.87■■■□□ 2.37
HMGB1P09429 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
HMGB1P09429 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.86■■■□□ 2.37
HMGB1P09429 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
HMGB1P09429 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.85■■■□□ 2.37
HMGB1P09429 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
HMGB1P09429 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.85■■■□□ 2.37
HMGB1P09429 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
HMGB1P09429 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
HMGB1P09429 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
HMGB1P09429 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
HMGB1P09429 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
HMGB1P09429 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.82■■■□□ 2.36
HMGB1P09429 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
HMGB1P09429 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
HMGB1P09429 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
HMGB1P09429 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
HMGB1P09429 ZNRF2P2-203ENST00000454624 420 ntBASIC29.81■■■□□ 2.36
HMGB1P09429 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
HMGB1P09429 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
HMGB1P09429 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
HMGB1P09429 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
HMGB1P09429 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
HMGB1P09429 DUX4L13-201ENST00000554103 1267 ntBASIC29.79■■■□□ 2.36
HMGB1P09429 DUX4L15-201ENST00000611059 1267 ntBASIC29.79■■■□□ 2.36
HMGB1P09429 DUX4L23-201ENST00000615195 1269 ntBASIC29.79■■■□□ 2.36
HMGB1P09429 DUX4L24-201ENST00000617576 1269 ntBASIC29.79■■■□□ 2.36
HMGB1P09429 DUX4L22-201ENST00000618238 1269 ntBASIC29.79■■■□□ 2.36
HMGB1P09429 DUX4L20-201ENST00000619712 1269 ntBASIC29.79■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms