Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.41■■□□□ 1.66
TRIM49D1C9J1S8 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
TRIM49D1C9J1S8 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
TRIM49D1C9J1S8 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.4■■□□□ 1.66
TRIM49D1C9J1S8 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
TRIM49D1C9J1S8 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.4■■□□□ 1.66
TRIM49D1C9J1S8 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
TRIM49D1C9J1S8 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
TRIM49D1C9J1S8 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
TRIM49D1C9J1S8 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
TRIM49D1C9J1S8 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.38■■□□□ 1.65
TRIM49D1C9J1S8 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM49D1C9J1S8 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.37■■□□□ 1.65
TRIM49D1C9J1S8 MIR762-201ENST00000390236 83 ntBASIC25.37■■□□□ 1.65
TRIM49D1C9J1S8 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.37■■□□□ 1.65
TRIM49D1C9J1S8 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.37■■□□□ 1.65
TRIM49D1C9J1S8 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM49D1C9J1S8 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM49D1C9J1S8 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.36■■□□□ 1.65
TRIM49D1C9J1S8 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.36■■□□□ 1.65
TRIM49D1C9J1S8 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM49D1C9J1S8 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM49D1C9J1S8 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM49D1C9J1S8 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM49D1C9J1S8 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM49D1C9J1S8 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.35■■□□□ 1.65
TRIM49D1C9J1S8 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.35■■□□□ 1.65
TRIM49D1C9J1S8 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM49D1C9J1S8 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
TRIM49D1C9J1S8 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM49D1C9J1S8 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.34■■□□□ 1.65
TRIM49D1C9J1S8 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM49D1C9J1S8 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM49D1C9J1S8 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM49D1C9J1S8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM49D1C9J1S8 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.32■■□□□ 1.64
TRIM49D1C9J1S8 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
TRIM49D1C9J1S8 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
TRIM49D1C9J1S8 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
TRIM49D1C9J1S8 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.32■■□□□ 1.64
TRIM49D1C9J1S8 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
TRIM49D1C9J1S8 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
TRIM49D1C9J1S8 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.3■■□□□ 1.64
TRIM49D1C9J1S8 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
TRIM49D1C9J1S8 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.3■■□□□ 1.64
TRIM49D1C9J1S8 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.3■■□□□ 1.64
TRIM49D1C9J1S8 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.29■■□□□ 1.64
TRIM49D1C9J1S8 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.29■■□□□ 1.64
TRIM49D1C9J1S8 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.29■■□□□ 1.64
TRIM49D1C9J1S8 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM49D1C9J1S8 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM49D1C9J1S8 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.28■■□□□ 1.64
TRIM49D1C9J1S8 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.28■■□□□ 1.64
TRIM49D1C9J1S8 AC135983.2-203ENST00000454486 1613 ntBASIC25.27■■□□□ 1.64
TRIM49D1C9J1S8 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49D1C9J1S8 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49D1C9J1S8 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49D1C9J1S8 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM49D1C9J1S8 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
TRIM49D1C9J1S8 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM49D1C9J1S8 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC25.26■■□□□ 1.63
TRIM49D1C9J1S8 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.26■■□□□ 1.63
TRIM49D1C9J1S8 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
TRIM49D1C9J1S8 AC018358.1-201ENST00000631079 1402 ntBASIC25.25■■□□□ 1.63
TRIM49D1C9J1S8 AL449106.1-201ENST00000608517 1980 ntBASIC25.25■■□□□ 1.63
TRIM49D1C9J1S8 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
TRIM49D1C9J1S8 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
TRIM49D1C9J1S8 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49D1C9J1S8 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49D1C9J1S8 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
TRIM49D1C9J1S8 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49D1C9J1S8 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM49D1C9J1S8 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
TRIM49D1C9J1S8 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
TRIM49D1C9J1S8 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 WHAMMP2-203ENST00000563942 1603 ntBASIC25.22■■□□□ 1.63
TRIM49D1C9J1S8 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
TRIM49D1C9J1S8 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
TRIM49D1C9J1S8 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
TRIM49D1C9J1S8 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
TRIM49D1C9J1S8 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.2■■□□□ 1.62
TRIM49D1C9J1S8 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
TRIM49D1C9J1S8 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.2■■□□□ 1.62
TRIM49D1C9J1S8 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
TRIM49D1C9J1S8 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
TRIM49D1C9J1S8 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
TRIM49D1C9J1S8 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
TRIM49D1C9J1S8 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
TRIM49D1C9J1S8 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.19■■□□□ 1.62
TRIM49D1C9J1S8 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.19■■□□□ 1.62
TRIM49D1C9J1S8 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.19■■□□□ 1.62
TRIM49D1C9J1S8 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
TRIM49D1C9J1S8 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms