Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 ABR-203ENST00000536794 2213 ntTSL 2 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 AP004607.7-201ENST00000527152 1677 ntBASIC13.47□□□□□ -0.25
VPS25Q9BRG1 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
VPS25Q9BRG1 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 LINC01971-201ENST00000617888 1048 ntBASIC13.46□□□□□ -0.25
VPS25Q9BRG1 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS25Q9BRG1 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS25Q9BRG1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 AC080080.1-201ENST00000625121 2420 ntBASIC13.45□□□□□ -0.26
VPS25Q9BRG1 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 BICD1-207ENST00000551848 1962 ntBASIC13.45□□□□□ -0.26
VPS25Q9BRG1 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS25Q9BRG1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC13.44□□□□□ -0.26
VPS25Q9BRG1 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS25Q9BRG1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
VPS25Q9BRG1 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms