Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.62■□□□□ 0.57
LSM1O15116 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.62■□□□□ 0.57
LSM1O15116 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.62■□□□□ 0.57
LSM1O15116 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.62■□□□□ 0.57
LSM1O15116 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.62■□□□□ 0.57
LSM1O15116 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.62■□□□□ 0.57
LSM1O15116 HLA-B-256ENST00000639848 1089 ntBASIC18.62■□□□□ 0.57
LSM1O15116 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
LSM1O15116 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LSM1O15116 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 AC104417.2-201ENST00000562989 1793 ntBASIC18.62■□□□□ 0.57
LSM1O15116 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
LSM1O15116 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LSM1O15116 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LSM1O15116 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.62■□□□□ 0.57
LSM1O15116 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LSM1O15116 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LSM1O15116 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LSM1O15116 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.61■□□□□ 0.57
LSM1O15116 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 SDHAP1-207ENST00000440850 2000 ntBASIC18.61■□□□□ 0.57
LSM1O15116 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.61■□□□□ 0.57
LSM1O15116 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.61■□□□□ 0.57
LSM1O15116 AC092368.3-202ENST00000574180 1591 ntBASIC18.61■□□□□ 0.57
LSM1O15116 AP006587.1-201ENST00000534129 1502 ntBASIC18.61■□□□□ 0.57
LSM1O15116 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.61■□□□□ 0.57
LSM1O15116 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.61■□□□□ 0.57
LSM1O15116 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 AL121906.2-201ENST00000621597 723 ntBASIC18.61■□□□□ 0.57
LSM1O15116 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.61■□□□□ 0.57
LSM1O15116 AC006333.2-201ENST00000607957 2099 ntBASIC18.61■□□□□ 0.57
LSM1O15116 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.61■□□□□ 0.57
LSM1O15116 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LSM1O15116 AL138781.2-201ENST00000617896 1843 ntBASIC18.6■□□□□ 0.57
LSM1O15116 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LSM1O15116 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.6■□□□□ 0.57
LSM1O15116 YBX1P10-201ENST00000444752 975 ntBASIC18.6■□□□□ 0.57
LSM1O15116 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.6■□□□□ 0.57
LSM1O15116 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.6■□□□□ 0.57
LSM1O15116 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.6■□□□□ 0.57
LSM1O15116 MIR4758-201ENST00000577688 71 ntBASIC18.6■□□□□ 0.57
LSM1O15116 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LSM1O15116 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.6■□□□□ 0.57
LSM1O15116 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.6■□□□□ 0.57
LSM1O15116 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
LSM1O15116 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.6■□□□□ 0.57
LSM1O15116 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LSM1O15116 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LSM1O15116 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.59■□□□□ 0.57
LSM1O15116 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.59■□□□□ 0.57
LSM1O15116 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LSM1O15116 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LSM1O15116 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LSM1O15116 KRT8P8-201ENST00000434750 1448 ntBASIC18.59■□□□□ 0.57
LSM1O15116 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms