RNA–Protein interactions for RNA: ENST00000544079.2

CCT4-204, Transcript of chaperonin containing TCP1 subunit 4, humanhuman

TSL 2 BASIC

Gene CCT4, Length 2,261 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT4-204ENST00000544079 NISCHQ9Y2I1 1504 aa34.58■■■■□ 3.13
CCT4-204ENST00000544079 HRCP23327 699 aa30.94■■■□□ 2.54
CCT4-204ENST00000544079 PELP1Q8IZL8 1130 aaKnown RBP30.3■■■□□ 2.44
CCT4-204ENST00000544079 MYO15BQ96JP2 1530 aa30.01■■■□□ 2.39
CCT4-204ENST00000544079 SHROOM4Q9ULL8 1493 aa29.99■■■□□ 2.39
CCT4-204ENST00000544079 SUPT5HO00267 1087 aaKnown RBP29.97■■■□□ 2.39
CCT4-204ENST00000544079 PCGF6Q9BYE7 350 aa29.96■■■□□ 2.39
CCT4-204ENST00000544079 PPARGC1BQ86YN6 1023 aaKnown RBP29.85■■■□□ 2.37
CCT4-204ENST00000544079 CHIC1Q5VXU3 224 aa29.84■■■□□ 2.37
CCT4-204ENST00000544079 DCAF1Q9Y4B6 1507 aa29.82■■■□□ 2.36
CCT4-204ENST00000544079 ZCCHC6Q5VYS8 1495 aaKnown RBP29.51■■■□□ 2.31
CCT4-204ENST00000544079 CCDC180Q9P1Z9 1646 aa29.49■■■□□ 2.31
CCT4-204ENST00000544079 ZEB1P37275 1124 aaPredicted RBP29.31■■■□□ 2.28
CCT4-204ENST00000544079 TRIM26Q12899 539 aaPredicted RBP29.31■■■□□ 2.28
CCT4-204ENST00000544079 MYT1Q01538 1121 aa29.28■■■□□ 2.28
CCT4-204ENST00000544079 SCAF1Q9H7N4 1312 aaKnown RBP29.14■■■□□ 2.26
CCT4-204ENST00000544079 LOC105371045A0A1W2PR82 267 aa28.86■■■□□ 2.21
CCT4-204ENST00000544079 ACIN1Q9UKV3 1341 aaKnown RBP28.56■■■□□ 2.16
CCT4-204ENST00000544079 ABCC9O60706 1549 aa28.52■■■□□ 2.16
CCT4-204ENST00000544079 NEUROD1Q13562 356 aa28.3■■■□□ 2.12
CCT4-204ENST00000544079 CENPBP07199 599 aaPredicted RBP28.26■■■□□ 2.11
CCT4-204ENST00000544079 GTF3C3Q9Y5Q9 886 aa28.15■■■□□ 2.1
CCT4-204ENST00000544079 DCAF8L2P0C7V8 631 aa27.98■■■□□ 2.07
CCT4-204ENST00000544079 DIEXFQ68CQ4 756 aaKnown RBP27.94■■■□□ 2.06
CCT4-204ENST00000544079 TRIM41Q8WV44 630 aa27.94■■■□□ 2.06
CCT4-204ENST00000544079 CCER1Q8TC90 406 aaPredicted RBP27.79■■■□□ 2.04
CCT4-204ENST00000544079 RSF1Q96T23 1441 aaPredicted RBP27.76■■■□□ 2.03
CCT4-204ENST00000544079 RB1CC1Q8TDY2 1594 aa27.73■■■□□ 2.03
CCT4-204ENST00000544079 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.71■■■□□ 2.03
CCT4-204ENST00000544079 FAM9AQ8IZU1 332 aaPredicted RBP27.59■■■□□ 2.01
CCT4-204ENST00000544079 TTBK1Q5TCY1 1321 aaPredicted RBP27.57■■■□□ 2
CCT4-204ENST00000544079 ZNF316A6NFI3 1004 aaPredicted RBP27.49■■□□□ 1.99
CCT4-204ENST00000544079 WRNQ14191 1432 aaPredicted RBP eCLIP27.44■■□□□ 1.98
CCT4-204ENST00000544079 CLSPNQ9HAW4 1339 aa27.35■■□□□ 1.97
CCT4-204ENST00000544079 EHMT2Q96KQ7 1210 aa27.18■■□□□ 1.94
CCT4-204ENST00000544079 YTHDC1Q96MU7 727 aaKnown RBP27.16■■□□□ 1.94
CCT4-204ENST00000544079 SCRIBQ14160 1630 aa27.15■■□□□ 1.94
CCT4-204ENST00000544079 MIER1Q8N108 512 aa27.14■■□□□ 1.93
CCT4-204ENST00000544079 EIF4G1Q04637 1599 aaKnown RBP27.07■■□□□ 1.92
CCT4-204ENST00000544079 CEP162Q5TB80 1403 aa27■■□□□ 1.91
CCT4-204ENST00000544079 ANP32EQ9BTT0 268 aa26.99■■□□□ 1.91
CCT4-204ENST00000544079 TNIKQ9UKE5 1360 aa26.96■■□□□ 1.91
CCT4-204ENST00000544079 SUPT16HQ9Y5B9 1047 aaKnown RBP26.89■■□□□ 1.9
CCT4-204ENST00000544079 MROH2BQ7Z745 1585 aa26.87■■□□□ 1.89
CCT4-204ENST00000544079 BCL11AQ9H165 835 aa26.86■■□□□ 1.89
CCT4-204ENST00000544079 NACADO15069 1562 aa26.85■■□□□ 1.89
CCT4-204ENST00000544079 BAZ1AQ9NRL2 1556 aaPredicted RBP26.85■■□□□ 1.89
CCT4-204ENST00000544079 DNAJC5BQ9UF47 199 aa26.81■■□□□ 1.88
CCT4-204ENST00000544079 EEA1Q15075 1411 aa26.81■■□□□ 1.88
CCT4-204ENST00000544079 TSHZ2Q9NRE2 1034 aa26.79■■□□□ 1.88
CCT4-204ENST00000544079 WIZO95785 1651 aa26.79■■□□□ 1.88
CCT4-204ENST00000544079 CECR2Q9BXF3 1484 aa26.78■■□□□ 1.88
CCT4-204ENST00000544079 CCDC88BA6NC98 1476 aa26.64■■□□□ 1.86
CCT4-204ENST00000544079 GOLGA3Q08378 1498 aa26.59■■□□□ 1.85
CCT4-204ENST00000544079 ABCC8Q09428 1581 aa26.57■■□□□ 1.84
CCT4-204ENST00000544079 UNC13AQ9UPW8 1703 aa26.57■■□□□ 1.84
CCT4-204ENST00000544079 CSRNP3Q8WYN3 585 aa26.51■■□□□ 1.84
CCT4-204ENST00000544079 SOGA1O94964 1423 aa26.51■■□□□ 1.83
CCT4-204ENST00000544079 TOP2AP11388 1531 aaKnown RBP26.48■■□□□ 1.83
CCT4-204ENST00000544079 PABPN1Q86U42 306 aaKnown RBP eCLIP26.46■■□□□ 1.83
CCT4-204ENST00000544079 HNRNPUL2Q1KMD3 747 aaKnown RBP26.45■■□□□ 1.83
CCT4-204ENST00000544079 UBTFP17480 764 aaKnown RBP26.41■■□□□ 1.82
CCT4-204ENST00000544079 KIF21BO75037 1637 aa26.37■■□□□ 1.81
CCT4-204ENST00000544079 VPS8Q8N3P4 1428 aa26.36■■□□□ 1.81
CCT4-204ENST00000544079 SMARCA2P51531 1590 aa26.34■■□□□ 1.81
CCT4-204ENST00000544079 CEP164Q9UPV0 1460 aa26.32■■□□□ 1.8
CCT4-204ENST00000544079 BICRAQ9NZM4 1560 aa26.3■■□□□ 1.8
CCT4-204ENST00000544079 DHX57Q6P158 1386 aaKnown RBP26.3■■□□□ 1.8
CCT4-204ENST00000544079 RUSC2Q8N2Y8 1516 aa26.3■■□□□ 1.8
CCT4-204ENST00000544079 CLIP1P30622 1438 aa26.26■■□□□ 1.79
CCT4-204ENST00000544079 BAZ1BQ9UIG0 1483 aaKnown RBP26.24■■□□□ 1.79
CCT4-204ENST00000544079 APLP2Q06481 763 aa26.16■■□□□ 1.78
CCT4-204ENST00000544079 RBM19Q9Y4C8 960 aaKnown RBP26.15■■□□□ 1.78
CCT4-204ENST00000544079 SMARCA4P51532 1647 aa26.11■■□□□ 1.77
CCT4-204ENST00000544079 CUX2O14529 1486 aa26.09■■□□□ 1.77
CCT4-204ENST00000544079 FKBP8Q14318 412 aa26.06■■□□□ 1.76
CCT4-204ENST00000544079 NEFLP07196 543 aa26■■□□□ 1.75
CCT4-204ENST00000544079 MYT1LQ9UL68 1186 aa25.98■■□□□ 1.75
CCT4-204ENST00000544079 BCANQ96GW7 911 aa25.97■■□□□ 1.75
CCT4-204ENST00000544079 RRBP1Q9P2E9 1410 aaKnown RBP25.95■■□□□ 1.75
CCT4-204ENST00000544079 FANCIQ9NVI1 1328 aa25.95■■□□□ 1.74
CCT4-204ENST00000544079 KCNH8Q96L42 1107 aa25.89■■□□□ 1.73
CCT4-204ENST00000544079 SYNJ1O43426 1573 aa25.86■■□□□ 1.73
CCT4-204ENST00000544079 MSH5O43196 834 aa25.86■■□□□ 1.73
CCT4-204ENST00000544079 RAPGEF2Q9Y4G8 1499 aa25.86■■□□□ 1.73
CCT4-204ENST00000544079 CCER2I3L3R5 266 aa25.83■■□□□ 1.73
CCT4-204ENST00000544079 CC2D2AQ9P2K1 1620 aa25.79■■□□□ 1.72
CCT4-204ENST00000544079 ERICH3Q5RHP9 1530 aa25.76■■□□□ 1.71
CCT4-204ENST00000544079 PRKCSHP14314 528 aaPredicted RBP25.74■■□□□ 1.71
CCT4-204ENST00000544079 MAPKBP1O60336 1514 aa25.73■■□□□ 1.71
CCT4-204ENST00000544079 ARAP1Q96P48 1450 aa25.73■■□□□ 1.71
CCT4-204ENST00000544079 PPP1R15AO75807 674 aaPredicted RBP25.7■■□□□ 1.7
CCT4-204ENST00000544079 ERICH6Q7L0X2 663 aa25.69■■□□□ 1.7
CCT4-204ENST00000544079 CCNB3Q8WWL7 1395 aa25.69■■□□□ 1.7
CCT4-204ENST00000544079 TIMELESSQ9UNS1 1208 aa25.66■■□□□ 1.7
CCT4-204ENST00000544079 PEG3Q9GZU2 1588 aa25.65■■□□□ 1.7
CCT4-204ENST00000544079 CDK11AQ9UQ88 783 aaPredicted RBP25.63■■□□□ 1.69
CCT4-204ENST00000544079 DDX10Q13206 875 aaKnown RBP25.62■■□□□ 1.69
CCT4-204ENST00000544079 ITGAEP38570 1179 aa25.61■■□□□ 1.69
CCT4-204ENST00000544079 ERICH6BQ5W0A0 696 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms