RNA–Protein interactions for RNA: ENST00000639848.1

HLA-B-256, Transcript of major histocompatibility complex, class I, B, humanhuman

BASIC

Gene HLA-B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-B-256ENST00000639848 NISCHQ9Y2I1 1504 aa49.39■■■■■ 5.5
HLA-B-256ENST00000639848 CCDC180Q9P1Z9 1646 aa43.98■■■■■ 4.63
HLA-B-256ENST00000639848 ABCC9O60706 1549 aa43.16■■■■■ 4.5
HLA-B-256ENST00000639848 RB1CC1Q8TDY2 1594 aa41.5■■■■■ 4.23
HLA-B-256ENST00000639848 NACADO15069 1562 aa41.42■■■■■ 4.22
HLA-B-256ENST00000639848 DCAF8L2P0C7V8 631 aa41.25■■■■■ 4.19
HLA-B-256ENST00000639848 MYO15BQ96JP2 1530 aa41.19■■■■■ 4.18
HLA-B-256ENST00000639848 ZCCHC6Q5VYS8 1495 aaKnown RBP41.12■■■■■ 4.17
HLA-B-256ENST00000639848 DCAF1Q9Y4B6 1507 aa40.93■■■■■ 4.14
HLA-B-256ENST00000639848 UNC13AQ9UPW8 1703 aa40.4■■■■■ 4.06
HLA-B-256ENST00000639848 PABPN1Q86U42 306 aaKnown RBP eCLIP40.28■■■■■ 4.04
HLA-B-256ENST00000639848 BICRAQ9NZM4 1560 aa40.21■■■■■ 4.03
HLA-B-256ENST00000639848 SCRIBQ14160 1630 aa40.04■■■■■ 4
HLA-B-256ENST00000639848 SHROOM4Q9ULL8 1493 aa39.92■■■■□ 3.98
HLA-B-256ENST00000639848 DNAJC5BQ9UF47 199 aa39.76■■■■□ 3.96
HLA-B-256ENST00000639848 EIF4G1Q04637 1599 aaKnown RBP39.18■■■■□ 3.86
HLA-B-256ENST00000639848 CC2D2AQ9P2K1 1620 aa39.03■■■■□ 3.84
HLA-B-256ENST00000639848 CECR2Q9BXF3 1484 aa38.84■■■■□ 3.81
HLA-B-256ENST00000639848 SMARCA4P51532 1647 aa38.33■■■■□ 3.73
HLA-B-256ENST00000639848 BAZ1AQ9NRL2 1556 aaPredicted RBP38.31■■■■□ 3.72
HLA-B-256ENST00000639848 NCAPD3P42695 1498 aa38.25■■■■□ 3.71
HLA-B-256ENST00000639848 ATAD2BQ9ULI0 1458 aa38.21■■■■□ 3.71
HLA-B-256ENST00000639848 SMARCA2P51531 1590 aa38.17■■■■□ 3.7
HLA-B-256ENST00000639848 HMGXB3Q12766 1538 aa38.03■■■■□ 3.68
HLA-B-256ENST00000639848 MROH2BQ7Z745 1585 aa38.02■■■■□ 3.68
HLA-B-256ENST00000639848 PEG3Q9GZU2 1588 aa38.02■■■■□ 3.68
HLA-B-256ENST00000639848 BAZ1BQ9UIG0 1483 aaKnown RBP37.88■■■■□ 3.65
HLA-B-256ENST00000639848 RSF1Q96T23 1441 aaPredicted RBP37.57■■■■□ 3.6
HLA-B-256ENST00000639848 WIZO95785 1651 aa37.55■■■■□ 3.6
HLA-B-256ENST00000639848 NESP48681 1621 aa37.28■■■■□ 3.56
HLA-B-256ENST00000639848 ERCC6Q03468 1493 aa37.25■■■■□ 3.55
HLA-B-256ENST00000639848 LAMC3Q9Y6N6 1575 aa37.24■■■■□ 3.55
HLA-B-256ENST00000639848 TOP2AP11388 1531 aaKnown RBP37.23■■■■□ 3.55
HLA-B-256ENST00000639848 CADPSQ9ULU8 1353 aa37.11■■■■□ 3.53
HLA-B-256ENST00000639848 PDS5BQ9NTI5 1447 aa37.02■■■■□ 3.52
HLA-B-256ENST00000639848 CUX2O14529 1486 aa36.97■■■■□ 3.51
HLA-B-256ENST00000639848 CFTRP13569 1480 aa36.86■■■■□ 3.49
HLA-B-256ENST00000639848 KIF21AQ7Z4S6 1674 aa36.79■■■■□ 3.48
HLA-B-256ENST00000639848 THOC2Q8NI27 1593 aaKnown RBP36.78■■■■□ 3.48
HLA-B-256ENST00000639848 CCDC88BA6NC98 1476 aa36.77■■■■□ 3.48
HLA-B-256ENST00000639848 FANCD2Q9BXW9 1451 aa36.66■■■■□ 3.46
HLA-B-256ENST00000639848 CEP164Q9UPV0 1460 aa36.63■■■■□ 3.45
HLA-B-256ENST00000639848 MRC2Q9UBG0 1479 aa36.62■■■■□ 3.45
HLA-B-256ENST00000639848 WDR62O43379 1518 aa36.5■■■■□ 3.43
HLA-B-256ENST00000639848 PRDM2Q13029 1718 aa36.43■■■■□ 3.42
HLA-B-256ENST00000639848 SUPT5HO00267 1087 aaKnown RBP36.4■■■■□ 3.42
HLA-B-256ENST00000639848 URB2Q14146 1524 aaKnown RBP36.29■■■■□ 3.4
HLA-B-256ENST00000639848 ABCC8Q09428 1581 aa36.1■■■■□ 3.37
HLA-B-256ENST00000639848 TOPBP1Q92547 1522 aa36.04■■■■□ 3.36
HLA-B-256ENST00000639848 DNAJC5Q9H3Z4 198 aa36.02■■■■□ 3.36
HLA-B-256ENST00000639848 DNMBPQ6XZF7 1577 aa35.99■■■■□ 3.35
HLA-B-256ENST00000639848 IFT140Q96RY7 1462 aa35.89■■■■□ 3.34
HLA-B-256ENST00000639848 POLA1P09884 1462 aaPredicted RBP35.73■■■■□ 3.31
HLA-B-256ENST00000639848 CUX1P39880 1505 aa35.69■■■■□ 3.3
HLA-B-256ENST00000639848 ZNF608Q9ULD9 1512 aaPredicted RBP35.68■■■■□ 3.3
HLA-B-256ENST00000639848 TARBP1Q13395 1621 aaKnown RBP35.65■■■■□ 3.3
HLA-B-256ENST00000639848 FGD5Q6ZNL6 1462 aa35.6■■■■□ 3.29
HLA-B-256ENST00000639848 SOGA1O94964 1423 aa35.58■■■■□ 3.29
HLA-B-256ENST00000639848 RAD54L2Q9Y4B4 1467 aa35.54■■■■□ 3.28
HLA-B-256ENST00000639848 EIF4G3O43432 1585 aaKnown RBP35.53■■■■□ 3.28
HLA-B-256ENST00000639848 AQRO60306 1485 aaKnown RBP eCLIP35.47■■■■□ 3.27
HLA-B-256ENST00000639848 WDR97A6NE52 1622 aa35.43■■■■□ 3.26
HLA-B-256ENST00000639848 WRNQ14191 1432 aaPredicted RBP eCLIP35.43■■■■□ 3.26
HLA-B-256ENST00000639848 OSCARQ8IYS5 282 aa35.39■■■■□ 3.26
HLA-B-256ENST00000639848 TDRD9Q8NDG6 1382 aaKnown RBP35.38■■■■□ 3.26
HLA-B-256ENST00000639848 TOP2BQ02880 1626 aa35.35■■■■□ 3.25
HLA-B-256ENST00000639848 BIVM-ERCC5R4GMW8 1640 aa35.32■■■■□ 3.25
HLA-B-256ENST00000639848 SYNJ1O43426 1573 aa35.3■■■■□ 3.24
HLA-B-256ENST00000639848 ABCA10Q8WWZ4 1543 aa35.29■■■■□ 3.24
HLA-B-256ENST00000639848 GRIN2BQ13224 1484 aa35.22■■■■□ 3.23
HLA-B-256ENST00000639848 GAPVD1Q14C86 1478 aa35.17■■■■□ 3.22
HLA-B-256ENST00000639848 SNAPC4Q5SXM2 1469 aa35.15■■■■□ 3.22
HLA-B-256ENST00000639848 MAGI1Q96QZ7 1491 aaPredicted RBP35.15■■■■□ 3.22
HLA-B-256ENST00000639848 ABCA5Q8WWZ7 1642 aa35.12■■■■□ 3.21
HLA-B-256ENST00000639848 FBLN2P98095 1184 aa35.06■■■■□ 3.2
HLA-B-256ENST00000639848 CHD1O14646 1710 aa35.05■■■■□ 3.2
HLA-B-256ENST00000639848 PBRM1Q86U86 1689 aa35.01■■■■□ 3.2
HLA-B-256ENST00000639848 SYNJ2O15056 1496 aa35.01■■■■□ 3.19
HLA-B-256ENST00000639848 CHMP7Q8WUX9 453 aaPredicted RBP34.99■■■■□ 3.19
HLA-B-256ENST00000639848 ERICH3Q5RHP9 1530 aa34.87■■■■□ 3.17
HLA-B-256ENST00000639848 ADAMTS12P58397 1594 aa34.8■■■■□ 3.16
HLA-B-256ENST00000639848 ARHGEF11O15085 1522 aa34.79■■■■□ 3.16
HLA-B-256ENST00000639848 FHAD1B1AJZ9 1412 aa34.79■■■■□ 3.16
HLA-B-256ENST00000639848 CLASP1Q7Z460 1538 aa34.77■■■■□ 3.16
HLA-B-256ENST00000639848 RIMBP3CA6NJZ7 1639 aa34.76■■■■□ 3.15
HLA-B-256ENST00000639848 RIMBP3BA6NNM3 1639 aa34.76■■■■□ 3.15
HLA-B-256ENST00000639848 RIMBP3Q9UFD9 1639 aa34.76■■■■□ 3.15
HLA-B-256ENST00000639848 GRIN2AQ12879 1464 aa34.74■■■■□ 3.15
HLA-B-256ENST00000639848 KIF27Q86VH2 1401 aa34.72■■■■□ 3.15
HLA-B-256ENST00000639848 TRIM41Q8WV44 630 aa34.68■■■■□ 3.14
HLA-B-256ENST00000639848 NUP160Q12769 1436 aa34.63■■■■□ 3.13
HLA-B-256ENST00000639848 IGF1RP08069 1367 aa34.6■■■■□ 3.13
HLA-B-256ENST00000639848 CEP170Q5SW79 1584 aa34.53■■■■□ 3.12
HLA-B-256ENST00000639848 ARAP1Q96P48 1450 aa34.5■■■■□ 3.11
HLA-B-256ENST00000639848 CUL7Q14999 1698 aa34.48■■■■□ 3.11
HLA-B-256ENST00000639848 CYB5RLQ6IPT4 315 aa34.45■■■■□ 3.11
HLA-B-256ENST00000639848 CARMIL1Q5VZK9 1371 aa34.37■■■■□ 3.09
HLA-B-256ENST00000639848 SHROOM2Q13796 1616 aa34.33■■■■□ 3.09
HLA-B-256ENST00000639848 RUSC2Q8N2Y8 1516 aa34.3■■■■□ 3.08
HLA-B-256ENST00000639848 JPH4Q96JJ6 628 aa34.25■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms