Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 AC144652.1-201ENST00000609974 1624 ntBASIC13.55□□□□□ -0.24
VPS25Q9BRG1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS25Q9BRG1 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 AC006128.1-201ENST00000624704 1661 ntBASIC13.54□□□□□ -0.24
VPS25Q9BRG1 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS25Q9BRG1 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 AL354751.1-201ENST00000412768 1863 ntBASIC13.53□□□□□ -0.24
VPS25Q9BRG1 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 HLA-V-202ENST00000446817 847 ntBASIC13.53□□□□□ -0.24
VPS25Q9BRG1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 AC087741.3-201ENST00000624270 1347 ntBASIC13.53□□□□□ -0.24
VPS25Q9BRG1 CES3-203ENST00000543856 3178 ntTSL 2 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 AC005052.1-201ENST00000625181 2492 ntBASIC13.53□□□□□ -0.24
VPS25Q9BRG1 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS25Q9BRG1 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms