Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
ZC3H4Q9UPT8 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
ZC3H4Q9UPT8 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
ZC3H4Q9UPT8 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.67■■■□□ 2.66
ZC3H4Q9UPT8 AL592295.1-201ENST00000400984 884 ntBASIC31.66■■■□□ 2.66
ZC3H4Q9UPT8 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.66■■■□□ 2.66
ZC3H4Q9UPT8 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
ZC3H4Q9UPT8 TRIR-205ENST00000592273 783 ntTSL 3 BASIC31.66■■■□□ 2.66
ZC3H4Q9UPT8 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
ZC3H4Q9UPT8 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.65■■■□□ 2.66
ZC3H4Q9UPT8 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
ZC3H4Q9UPT8 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.64■■■□□ 2.66
ZC3H4Q9UPT8 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
ZC3H4Q9UPT8 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.64■■■□□ 2.66
ZC3H4Q9UPT8 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
ZC3H4Q9UPT8 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
ZC3H4Q9UPT8 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.62■■■□□ 2.65
ZC3H4Q9UPT8 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
ZC3H4Q9UPT8 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
ZC3H4Q9UPT8 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
ZC3H4Q9UPT8 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.62■■■□□ 2.65
ZC3H4Q9UPT8 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
ZC3H4Q9UPT8 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.61■■■□□ 2.65
ZC3H4Q9UPT8 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.6■■■□□ 2.65
ZC3H4Q9UPT8 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
ZC3H4Q9UPT8 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
ZC3H4Q9UPT8 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
ZC3H4Q9UPT8 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
ZC3H4Q9UPT8 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
ZC3H4Q9UPT8 ECEL1P2-201ENST00000461596 1295 ntBASIC31.58■■■□□ 2.65
ZC3H4Q9UPT8 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
ZC3H4Q9UPT8 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
ZC3H4Q9UPT8 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.57■■■□□ 2.64
ZC3H4Q9UPT8 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
ZC3H4Q9UPT8 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.57■■■□□ 2.64
ZC3H4Q9UPT8 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.57■■■□□ 2.64
ZC3H4Q9UPT8 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
ZC3H4Q9UPT8 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.56■■■□□ 2.64
ZC3H4Q9UPT8 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
ZC3H4Q9UPT8 AL451085.2-201ENST00000605085 799 ntBASIC31.55■■■□□ 2.64
ZC3H4Q9UPT8 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC31.54■■■□□ 2.64
ZC3H4Q9UPT8 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.54■■■□□ 2.64
ZC3H4Q9UPT8 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.54■■■□□ 2.64
ZC3H4Q9UPT8 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
ZC3H4Q9UPT8 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC31.53■■■□□ 2.64
ZC3H4Q9UPT8 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.53■■■□□ 2.64
ZC3H4Q9UPT8 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
ZC3H4Q9UPT8 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
ZC3H4Q9UPT8 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
ZC3H4Q9UPT8 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
ZC3H4Q9UPT8 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
ZC3H4Q9UPT8 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
ZC3H4Q9UPT8 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
ZC3H4Q9UPT8 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
ZC3H4Q9UPT8 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
ZC3H4Q9UPT8 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
ZC3H4Q9UPT8 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.49■■■□□ 2.63
ZC3H4Q9UPT8 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
ZC3H4Q9UPT8 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
ZC3H4Q9UPT8 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.48■■■□□ 2.63
ZC3H4Q9UPT8 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.48■■■□□ 2.63
ZC3H4Q9UPT8 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.47■■■□□ 2.63
ZC3H4Q9UPT8 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.47■■■□□ 2.63
ZC3H4Q9UPT8 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.47■■■□□ 2.63
ZC3H4Q9UPT8 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
ZC3H4Q9UPT8 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
ZC3H4Q9UPT8 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.46■■■□□ 2.63
ZC3H4Q9UPT8 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
ZC3H4Q9UPT8 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.46■■■□□ 2.63
ZC3H4Q9UPT8 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
ZC3H4Q9UPT8 AC129492.7-201ENST00000622992 756 ntBASIC31.46■■■□□ 2.63
ZC3H4Q9UPT8 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
ZC3H4Q9UPT8 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
ZC3H4Q9UPT8 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
ZC3H4Q9UPT8 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
ZC3H4Q9UPT8 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
ZC3H4Q9UPT8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.44■■■□□ 2.62
ZC3H4Q9UPT8 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
ZC3H4Q9UPT8 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
ZC3H4Q9UPT8 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
ZC3H4Q9UPT8 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
ZC3H4Q9UPT8 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.42■■■□□ 2.62
ZC3H4Q9UPT8 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
ZC3H4Q9UPT8 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.41■■■□□ 2.62
ZC3H4Q9UPT8 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.4■■■□□ 2.62
ZC3H4Q9UPT8 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.39■■■□□ 2.62
ZC3H4Q9UPT8 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
ZC3H4Q9UPT8 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
ZC3H4Q9UPT8 MIR219A2-201ENST00000608502 1504 ntBASIC31.38■■■□□ 2.61
ZC3H4Q9UPT8 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
ZC3H4Q9UPT8 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
ZC3H4Q9UPT8 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
ZC3H4Q9UPT8 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
ZC3H4Q9UPT8 AC135983.2-203ENST00000454486 1613 ntBASIC31.36■■■□□ 2.61
ZC3H4Q9UPT8 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
ZC3H4Q9UPT8 AC126177.7-201ENST00000547904 679 ntBASIC31.36■■■□□ 2.61
ZC3H4Q9UPT8 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.36■■■□□ 2.61
ZC3H4Q9UPT8 AC010864.1-201ENST00000609407 1511 ntBASIC31.36■■■□□ 2.61
ZC3H4Q9UPT8 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
ZC3H4Q9UPT8 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms