Protein–RNA interactions for Protein: Q9N2K0

HERV-H_2q24.3 provirus ancestral Env polyprotein, humanhuman

Predictions only

Length 584 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q9N2K0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Q9N2K0 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.43■■□□□ 1.02
Q9N2K0 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Q9N2K0 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Q9N2K0 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.43■■□□□ 1.02
Q9N2K0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Q9N2K0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Q9N2K0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Q9N2K0 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Q9N2K0 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Q9N2K0 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.41■■□□□ 1.02
Q9N2K0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Q9N2K0 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Q9N2K0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.4■■□□□ 1.02
Q9N2K0 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Q9N2K0 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Q9N2K0 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.4■■□□□ 1.02
Q9N2K0 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Q9N2K0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
Q9N2K0 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Q9N2K0 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Q9N2K0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Q9N2K0 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.38■■□□□ 1.01
Q9N2K0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
Q9N2K0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.38■■□□□ 1.01
Q9N2K0 AC100797.4-201ENST00000631653 1827 ntBASIC21.38■■□□□ 1.01
Q9N2K0 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.38■■□□□ 1.01
Q9N2K0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Q9N2K0 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Q9N2K0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.37■■□□□ 1.01
Q9N2K0 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Q9N2K0 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.37■■□□□ 1.01
Q9N2K0 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Q9N2K0 LINC01003-201ENST00000564834 1764 ntBASIC21.36■■□□□ 1.01
Q9N2K0 MIR762-201ENST00000390236 83 ntBASIC21.36■■□□□ 1.01
Q9N2K0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Q9N2K0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Q9N2K0 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Q9N2K0 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Q9N2K0 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Q9N2K0 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Q9N2K0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Q9N2K0 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Q9N2K0 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Q9N2K0 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Q9N2K0 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Q9N2K0 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Q9N2K0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.33■■□□□ 1.01
Q9N2K0 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Q9N2K0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
Q9N2K0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.33■■□□□ 1.01
Q9N2K0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
Q9N2K0 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Q9N2K0 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.32■■□□□ 1
Q9N2K0 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.32■■□□□ 1
Q9N2K0 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
Q9N2K0 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Q9N2K0 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Q9N2K0 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.31■■□□□ 1
Q9N2K0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.31■■□□□ 1
Q9N2K0 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Q9N2K0 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Q9N2K0 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Q9N2K0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
Q9N2K0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.3■■□□□ 1
Q9N2K0 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.3■■□□□ 1
Q9N2K0 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.3■■□□□ 1
Q9N2K0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.3■■□□□ 1
Q9N2K0 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Q9N2K0 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Q9N2K0 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Q9N2K0 AP002414.2-202ENST00000590929 1450 ntBASIC21.28■■□□□ 1
Q9N2K0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Q9N2K0 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.28■■□□□ 1
Q9N2K0 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Q9N2K0 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.27■■□□□ 1
Q9N2K0 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.27■■□□□ 1
Q9N2K0 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.27■■□□□ 1
Q9N2K0 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.27■■□□□ 1
Q9N2K0 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Q9N2K0 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Q9N2K0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Q9N2K0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.26■□□□□ 0.99
Q9N2K0 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Q9N2K0 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Q9N2K0 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Q9N2K0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Q9N2K0 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.25■□□□□ 0.99
Q9N2K0 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.24■□□□□ 0.99
Q9N2K0 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Q9N2K0 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.24■□□□□ 0.99
Q9N2K0 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Q9N2K0 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Q9N2K0 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Q9N2K0 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.23■□□□□ 0.99
Q9N2K0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Q9N2K0 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Q9N2K0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.22■□□□□ 0.99
Q9N2K0 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.22■□□□□ 0.99
Q9N2K0 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 322.9 ms