Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SNRNP40Q96DI7 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SNRNP40Q96DI7 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
SNRNP40Q96DI7 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
SNRNP40Q96DI7 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
SNRNP40Q96DI7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
SNRNP40Q96DI7 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.39■■□□□ 1.33
SNRNP40Q96DI7 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.38■■□□□ 1.33
SNRNP40Q96DI7 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
SNRNP40Q96DI7 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SNRNP40Q96DI7 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
SNRNP40Q96DI7 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
SNRNP40Q96DI7 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.37■■□□□ 1.33
SNRNP40Q96DI7 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.37■■□□□ 1.33
SNRNP40Q96DI7 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SNRNP40Q96DI7 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SNRNP40Q96DI7 AC127502.1-201ENST00000399971 1502 ntBASIC23.36■■□□□ 1.33
SNRNP40Q96DI7 AC135983.2-203ENST00000454486 1613 ntBASIC23.36■■□□□ 1.33
SNRNP40Q96DI7 WHAMMP2-203ENST00000563942 1603 ntBASIC23.36■■□□□ 1.33
SNRNP40Q96DI7 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.35■■□□□ 1.33
SNRNP40Q96DI7 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SNRNP40Q96DI7 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC23.34■■□□□ 1.33
SNRNP40Q96DI7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SNRNP40Q96DI7 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNRNP40Q96DI7 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNRNP40Q96DI7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SNRNP40Q96DI7 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
SNRNP40Q96DI7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
SNRNP40Q96DI7 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SNRNP40Q96DI7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.33■■□□□ 1.33
SNRNP40Q96DI7 AL033527.3-201ENST00000566366 1196 ntBASIC23.33■■□□□ 1.33
SNRNP40Q96DI7 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SNRNP40Q96DI7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
SNRNP40Q96DI7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
SNRNP40Q96DI7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.32■■□□□ 1.32
SNRNP40Q96DI7 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
SNRNP40Q96DI7 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
SNRNP40Q96DI7 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
SNRNP40Q96DI7 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SNRNP40Q96DI7 U85056.1-201ENST00000616429 682 ntBASIC23.31■■□□□ 1.32
SNRNP40Q96DI7 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SNRNP40Q96DI7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SNRNP40Q96DI7 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.3■■□□□ 1.32
SNRNP40Q96DI7 AC110285.7-201ENST00000624417 1536 ntBASIC23.29■■□□□ 1.32
SNRNP40Q96DI7 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SNRNP40Q96DI7 AC060814.1-201ENST00000554326 538 ntBASIC23.29■■□□□ 1.32
SNRNP40Q96DI7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.29■■□□□ 1.32
SNRNP40Q96DI7 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SNRNP40Q96DI7 AC018358.1-201ENST00000631079 1402 ntBASIC23.28■■□□□ 1.32
SNRNP40Q96DI7 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SNRNP40Q96DI7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SNRNP40Q96DI7 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SNRNP40Q96DI7 AC148477.6-201ENST00000623746 465 ntBASIC23.27■■□□□ 1.32
SNRNP40Q96DI7 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SNRNP40Q96DI7 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.27■■□□□ 1.32
SNRNP40Q96DI7 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.26■■□□□ 1.31
SNRNP40Q96DI7 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
SNRNP40Q96DI7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SNRNP40Q96DI7 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SNRNP40Q96DI7 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
SNRNP40Q96DI7 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SNRNP40Q96DI7 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SNRNP40Q96DI7 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.23■■□□□ 1.31
SNRNP40Q96DI7 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SNRNP40Q96DI7 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
SNRNP40Q96DI7 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.23■■□□□ 1.31
SNRNP40Q96DI7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
SNRNP40Q96DI7 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.21■■□□□ 1.31
SNRNP40Q96DI7 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.21■■□□□ 1.31
SNRNP40Q96DI7 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.21■■□□□ 1.31
SNRNP40Q96DI7 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
SNRNP40Q96DI7 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.2■■□□□ 1.3
SNRNP40Q96DI7 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
SNRNP40Q96DI7 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.19■■□□□ 1.3
SNRNP40Q96DI7 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SNRNP40Q96DI7 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SNRNP40Q96DI7 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
SNRNP40Q96DI7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
SNRNP40Q96DI7 MIR219A2-201ENST00000608502 1504 ntBASIC23.18■■□□□ 1.3
SNRNP40Q96DI7 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SNRNP40Q96DI7 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SNRNP40Q96DI7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SNRNP40Q96DI7 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SNRNP40Q96DI7 TSPY13P-201ENST00000338964 914 ntBASIC23.17■■□□□ 1.3
SNRNP40Q96DI7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.17■■□□□ 1.3
SNRNP40Q96DI7 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SNRNP40Q96DI7 KRT18P60-201ENST00000312876 1297 ntBASIC23.16■■□□□ 1.3
SNRNP40Q96DI7 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SNRNP40Q96DI7 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.16■■□□□ 1.3
SNRNP40Q96DI7 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.16■■□□□ 1.3
SNRNP40Q96DI7 AC092296.2-201ENST00000589470 999 ntBASIC23.16■■□□□ 1.3
SNRNP40Q96DI7 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SNRNP40Q96DI7 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SNRNP40Q96DI7 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SNRNP40Q96DI7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.15■■□□□ 1.3
SNRNP40Q96DI7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.15■■□□□ 1.3
SNRNP40Q96DI7 AC004987.1-201ENST00000428627 508 ntBASIC23.15■■□□□ 1.3
SNRNP40Q96DI7 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SNRNP40Q96DI7 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SNRNP40Q96DI7 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms