Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHKBP1Q8TBC3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
SHKBP1Q8TBC3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.11■■□□□ 1.93
SHKBP1Q8TBC3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHKBP1Q8TBC3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHKBP1Q8TBC3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHKBP1Q8TBC3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
SHKBP1Q8TBC3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC27.1■■□□□ 1.93
SHKBP1Q8TBC3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC27.1■■□□□ 1.93
SHKBP1Q8TBC3 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHKBP1Q8TBC3 AL135925.1-201ENST00000605920 1701 ntBASIC27.08■■□□□ 1.93
SHKBP1Q8TBC3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC27.08■■□□□ 1.93
SHKBP1Q8TBC3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SHKBP1Q8TBC3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.08■■□□□ 1.92
SHKBP1Q8TBC3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC27.07■■□□□ 1.92
SHKBP1Q8TBC3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHKBP1Q8TBC3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
SHKBP1Q8TBC3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHKBP1Q8TBC3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC27.03■■□□□ 1.92
SHKBP1Q8TBC3 AC135983.2-203ENST00000454486 1613 ntBASIC27.03■■□□□ 1.92
SHKBP1Q8TBC3 WHAMMP2-203ENST00000563942 1603 ntBASIC27.03■■□□□ 1.92
SHKBP1Q8TBC3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHKBP1Q8TBC3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SHKBP1Q8TBC3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
SHKBP1Q8TBC3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHKBP1Q8TBC3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC27.02■■□□□ 1.92
SHKBP1Q8TBC3 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC27.01■■□□□ 1.92
SHKBP1Q8TBC3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC27.01■■□□□ 1.92
SHKBP1Q8TBC3 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHKBP1Q8TBC3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHKBP1Q8TBC3 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHKBP1Q8TBC3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHKBP1Q8TBC3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHKBP1Q8TBC3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC27■■□□□ 1.91
SHKBP1Q8TBC3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHKBP1Q8TBC3 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
SHKBP1Q8TBC3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.99■■□□□ 1.91
SHKBP1Q8TBC3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SHKBP1Q8TBC3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SHKBP1Q8TBC3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SHKBP1Q8TBC3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.97■■□□□ 1.91
SHKBP1Q8TBC3 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHKBP1Q8TBC3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC26.97■■□□□ 1.91
SHKBP1Q8TBC3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.96■■□□□ 1.91
SHKBP1Q8TBC3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
SHKBP1Q8TBC3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.96■■□□□ 1.91
SHKBP1Q8TBC3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SHKBP1Q8TBC3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.91
SHKBP1Q8TBC3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC26.95■■□□□ 1.9
SHKBP1Q8TBC3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SHKBP1Q8TBC3 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
SHKBP1Q8TBC3 GPX1-201ENST00000419349 1106 ntBASIC26.94■■□□□ 1.9
SHKBP1Q8TBC3 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHKBP1Q8TBC3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHKBP1Q8TBC3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC26.93■■□□□ 1.9
SHKBP1Q8TBC3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.93■■□□□ 1.9
SHKBP1Q8TBC3 ABCB10P1-201ENST00000614297 2181 ntBASIC26.92■■□□□ 1.9
SHKBP1Q8TBC3 RARRES2P2-201ENST00000394842 485 ntBASIC26.92■■□□□ 1.9
SHKBP1Q8TBC3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
SHKBP1Q8TBC3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.91■■□□□ 1.9
SHKBP1Q8TBC3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
SHKBP1Q8TBC3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
SHKBP1Q8TBC3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SHKBP1Q8TBC3 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SHKBP1Q8TBC3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.89■■□□□ 1.9
SHKBP1Q8TBC3 AC008813.1-201ENST00000536597 885 ntBASIC26.89■■□□□ 1.9
SHKBP1Q8TBC3 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
SHKBP1Q8TBC3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC26.87■■□□□ 1.89
SHKBP1Q8TBC3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SHKBP1Q8TBC3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC26.87■■□□□ 1.89
SHKBP1Q8TBC3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.87■■□□□ 1.89
SHKBP1Q8TBC3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.87■■□□□ 1.89
SHKBP1Q8TBC3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SHKBP1Q8TBC3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SHKBP1Q8TBC3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHKBP1Q8TBC3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHKBP1Q8TBC3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHKBP1Q8TBC3 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
SHKBP1Q8TBC3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.85■■□□□ 1.89
SHKBP1Q8TBC3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHKBP1Q8TBC3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
SHKBP1Q8TBC3 AC110285.7-201ENST00000624417 1536 ntBASIC26.85■■□□□ 1.89
SHKBP1Q8TBC3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC26.84■■□□□ 1.89
SHKBP1Q8TBC3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.84■■□□□ 1.89
SHKBP1Q8TBC3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SHKBP1Q8TBC3 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SHKBP1Q8TBC3 RNF126P1-201ENST00000567452 1320 ntBASIC26.84■■□□□ 1.89
SHKBP1Q8TBC3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SHKBP1Q8TBC3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SHKBP1Q8TBC3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHKBP1Q8TBC3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHKBP1Q8TBC3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SHKBP1Q8TBC3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.8■■□□□ 1.88
SHKBP1Q8TBC3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.8■■□□□ 1.88
SHKBP1Q8TBC3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
SHKBP1Q8TBC3 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SHKBP1Q8TBC3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
SHKBP1Q8TBC3 AC022413.1-201ENST00000624602 984 ntBASIC26.79■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms