Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
CDH6P55285 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
CDH6P55285 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.67■■□□□ 1.86
CDH6P55285 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.66■■□□□ 1.86
CDH6P55285 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CDH6P55285 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.66■■□□□ 1.86
CDH6P55285 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
CDH6P55285 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.66■■□□□ 1.86
CDH6P55285 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
CDH6P55285 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
CDH6P55285 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CDH6P55285 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
CDH6P55285 AC100797.4-201ENST00000631653 1827 ntBASIC26.65■■□□□ 1.86
CDH6P55285 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.65■■□□□ 1.86
CDH6P55285 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.65■■□□□ 1.86
CDH6P55285 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CDH6P55285 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.64■■□□□ 1.86
CDH6P55285 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CDH6P55285 RPS2P35-201ENST00000443417 897 ntBASIC26.63■■□□□ 1.85
CDH6P55285 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CDH6P55285 AC135983.2-203ENST00000454486 1613 ntBASIC26.62■■□□□ 1.85
CDH6P55285 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CDH6P55285 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CDH6P55285 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CDH6P55285 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CDH6P55285 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.61■■□□□ 1.85
CDH6P55285 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.61■■□□□ 1.85
CDH6P55285 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.61■■□□□ 1.85
CDH6P55285 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
CDH6P55285 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
CDH6P55285 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CDH6P55285 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDH6P55285 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.6■■□□□ 1.85
CDH6P55285 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDH6P55285 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDH6P55285 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDH6P55285 LINC00273-201ENST00000539813 1452 ntBASIC26.6■■□□□ 1.85
CDH6P55285 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CDH6P55285 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.59■■□□□ 1.85
CDH6P55285 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
CDH6P55285 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
CDH6P55285 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CDH6P55285 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CDH6P55285 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
CDH6P55285 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.59■■□□□ 1.85
CDH6P55285 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.58■■□□□ 1.85
CDH6P55285 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
CDH6P55285 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CDH6P55285 WHAMMP2-203ENST00000563942 1603 ntBASIC26.58■■□□□ 1.85
CDH6P55285 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.84
CDH6P55285 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CDH6P55285 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.57■■□□□ 1.84
CDH6P55285 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.57■■□□□ 1.84
CDH6P55285 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.56■■□□□ 1.84
CDH6P55285 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CDH6P55285 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.56■■□□□ 1.84
CDH6P55285 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CDH6P55285 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.55■■□□□ 1.84
CDH6P55285 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDH6P55285 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDH6P55285 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
CDH6P55285 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDH6P55285 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CDH6P55285 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CDH6P55285 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.54■■□□□ 1.84
CDH6P55285 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.53■■□□□ 1.84
CDH6P55285 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDH6P55285 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDH6P55285 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDH6P55285 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
CDH6P55285 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CDH6P55285 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CDH6P55285 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CDH6P55285 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CDH6P55285 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.5■■□□□ 1.83
CDH6P55285 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.5■■□□□ 1.83
CDH6P55285 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CDH6P55285 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CDH6P55285 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CDH6P55285 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CDH6P55285 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.48■■□□□ 1.83
CDH6P55285 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.48■■□□□ 1.83
CDH6P55285 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.48■■□□□ 1.83
CDH6P55285 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CDH6P55285 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
CDH6P55285 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CDH6P55285 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CDH6P55285 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
CDH6P55285 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.47■■□□□ 1.83
CDH6P55285 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
CDH6P55285 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
CDH6P55285 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CDH6P55285 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CDH6P55285 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CDH6P55285 AC021231.2-201ENST00000594613 730 ntBASIC26.45■■□□□ 1.82
CDH6P55285 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.45■■□□□ 1.82
CDH6P55285 AP002414.2-202ENST00000590929 1450 ntBASIC26.43■■□□□ 1.82
CDH6P55285 DUX4L29-201ENST00000425409 679 ntBASIC26.43■■□□□ 1.82
CDH6P55285 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.43■■□□□ 1.82
CDH6P55285 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms