Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC008813.1-201ENST00000536597 885 ntBASIC33.26■■■□□ 2.92
COL5A3P25940 AC148477.6-201ENST00000623746 465 ntBASIC33.26■■■□□ 2.92
COL5A3P25940 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC33.26■■■□□ 2.91
COL5A3P25940 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC33.25■■■□□ 2.91
COL5A3P25940 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
COL5A3P25940 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC33.25■■■□□ 2.91
COL5A3P25940 AC060814.1-201ENST00000554326 538 ntBASIC33.25■■■□□ 2.91
COL5A3P25940 AC022413.1-201ENST00000624602 984 ntBASIC33.24■■■□□ 2.91
COL5A3P25940 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC33.23■■■□□ 2.91
COL5A3P25940 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
COL5A3P25940 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
COL5A3P25940 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
COL5A3P25940 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
COL5A3P25940 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC33.2■■■□□ 2.9
COL5A3P25940 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC33.19■■■□□ 2.9
COL5A3P25940 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
COL5A3P25940 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC33.19■■■□□ 2.9
COL5A3P25940 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
COL5A3P25940 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL5A3P25940 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
COL5A3P25940 AC127502.1-201ENST00000399971 1502 ntBASIC33.17■■■□□ 2.9
COL5A3P25940 HES4-202ENST00000428771 1040 ntTSL 2 BASIC33.17■■■□□ 2.9
COL5A3P25940 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC33.17■■■□□ 2.9
COL5A3P25940 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC33.17■■■□□ 2.9
COL5A3P25940 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC33.16■■■□□ 2.9
COL5A3P25940 CHST11-203ENST00000547956 936 ntTSL 2 BASIC33.16■■■□□ 2.9
COL5A3P25940 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
COL5A3P25940 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL5A3P25940 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC33.16■■■□□ 2.9
COL5A3P25940 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL5A3P25940 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
COL5A3P25940 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC33.15■■■□□ 2.9
COL5A3P25940 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
COL5A3P25940 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL5A3P25940 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC33.13■■■□□ 2.89
COL5A3P25940 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL5A3P25940 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
COL5A3P25940 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC33.12■■■□□ 2.89
COL5A3P25940 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL5A3P25940 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC33.11■■■□□ 2.89
COL5A3P25940 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
COL5A3P25940 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC33.11■■■□□ 2.89
COL5A3P25940 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
COL5A3P25940 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC33.1■■■□□ 2.89
COL5A3P25940 AC092296.2-201ENST00000589470 999 ntBASIC33.1■■■□□ 2.89
COL5A3P25940 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC33.09■■■□□ 2.89
COL5A3P25940 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC33.08■■■□□ 2.89
COL5A3P25940 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
COL5A3P25940 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
COL5A3P25940 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
COL5A3P25940 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC33.07■■■□□ 2.88
COL5A3P25940 PEX7-203ENST00000541292 945 ntTSL 5 BASIC33.07■■■□□ 2.88
COL5A3P25940 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC33.07■■■□□ 2.88
COL5A3P25940 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC33.06■■■□□ 2.88
COL5A3P25940 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
COL5A3P25940 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC33.05■■■□□ 2.88
COL5A3P25940 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL5A3P25940 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
COL5A3P25940 GFER-205ENST00000569451 517 ntTSL 5 BASIC33.05■■■□□ 2.88
COL5A3P25940 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
COL5A3P25940 HYI-213ENST00000583037 1322 ntTSL 5 BASIC33.04■■■□□ 2.88
COL5A3P25940 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC33.04■■■□□ 2.88
COL5A3P25940 AC018358.1-201ENST00000631079 1402 ntBASIC33.03■■■□□ 2.88
COL5A3P25940 RPS2-210ENST00000530225 765 ntTSL 2 BASIC33.03■■■□□ 2.88
COL5A3P25940 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC33.03■■■□□ 2.88
COL5A3P25940 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC33.02■■■□□ 2.88
COL5A3P25940 U85056.1-201ENST00000616429 682 ntBASIC33.02■■■□□ 2.88
COL5A3P25940 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC33.01■■■□□ 2.88
COL5A3P25940 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC33■■■□□ 2.87
COL5A3P25940 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
COL5A3P25940 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC32.99■■■□□ 2.87
COL5A3P25940 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
COL5A3P25940 AC110285.7-201ENST00000624417 1536 ntBASIC32.99■■■□□ 2.87
COL5A3P25940 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.99■■■□□ 2.87
COL5A3P25940 KRT18P60-201ENST00000312876 1297 ntBASIC32.98■■■□□ 2.87
COL5A3P25940 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC32.98■■■□□ 2.87
COL5A3P25940 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
COL5A3P25940 AL033527.3-201ENST00000566366 1196 ntBASIC32.97■■■□□ 2.87
COL5A3P25940 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
COL5A3P25940 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
COL5A3P25940 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC32.97■■■□□ 2.87
COL5A3P25940 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
COL5A3P25940 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
COL5A3P25940 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
COL5A3P25940 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
COL5A3P25940 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC32.95■■■□□ 2.87
COL5A3P25940 MIR219A2-201ENST00000608502 1504 ntBASIC32.94■■■□□ 2.86
COL5A3P25940 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.94■■■□□ 2.86
COL5A3P25940 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC32.94■■■□□ 2.86
COL5A3P25940 AL135925.1-201ENST00000605920 1701 ntBASIC32.92■■■□□ 2.86
COL5A3P25940 AL157400.5-201ENST00000507624 621 ntBASIC32.91■■■□□ 2.86
COL5A3P25940 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
COL5A3P25940 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
COL5A3P25940 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
COL5A3P25940 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC32.91■■■□□ 2.86
COL5A3P25940 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC32.9■■■□□ 2.86
COL5A3P25940 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
COL5A3P25940 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC32.89■■■□□ 2.86
COL5A3P25940 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
COL5A3P25940 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.88■■■□□ 2.85
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms