Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC11.83□□□□□ -0.52
USH2AO75445 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
USH2AO75445 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
USH2AO75445 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
USH2AO75445 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC11.82□□□□□ -0.52
USH2AO75445 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
USH2AO75445 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
USH2AO75445 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC11.82□□□□□ -0.52
USH2AO75445 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC11.82□□□□□ -0.52
USH2AO75445 AC092296.2-201ENST00000589470 999 ntBASIC11.81□□□□□ -0.52
USH2AO75445 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
USH2AO75445 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC11.81□□□□□ -0.52
USH2AO75445 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
USH2AO75445 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
USH2AO75445 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
USH2AO75445 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
USH2AO75445 DUX4L18-201ENST00000553347 1267 ntBASIC11.81□□□□□ -0.52
USH2AO75445 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
USH2AO75445 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
USH2AO75445 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC11.8□□□□□ -0.52
USH2AO75445 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC11.8□□□□□ -0.52
USH2AO75445 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
USH2AO75445 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
USH2AO75445 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
USH2AO75445 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC11.8□□□□□ -0.52
USH2AO75445 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
USH2AO75445 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
USH2AO75445 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
USH2AO75445 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
USH2AO75445 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC11.8□□□□□ -0.52
USH2AO75445 AC009299.2-201ENST00000482477 511 ntBASIC11.8□□□□□ -0.52
USH2AO75445 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC11.8□□□□□ -0.52
USH2AO75445 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC11.79□□□□□ -0.52
USH2AO75445 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
USH2AO75445 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
USH2AO75445 KRT8P33-201ENST00000508125 1423 ntBASIC11.79□□□□□ -0.52
USH2AO75445 RP9P-202ENST00000450133 1212 ntBASIC11.79□□□□□ -0.52
USH2AO75445 OR2A1-AS1-204ENST00000470435 602 ntBASIC11.79□□□□□ -0.52
USH2AO75445 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC11.79□□□□□ -0.52
USH2AO75445 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC11.79□□□□□ -0.52
USH2AO75445 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
USH2AO75445 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
USH2AO75445 LINC00273-201ENST00000539813 1452 ntBASIC11.78□□□□□ -0.52
USH2AO75445 AC103834.1-201ENST00000520383 144 ntBASIC11.78□□□□□ -0.52
USH2AO75445 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
USH2AO75445 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
USH2AO75445 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
USH2AO75445 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
USH2AO75445 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC11.78□□□□□ -0.52
USH2AO75445 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
USH2AO75445 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
USH2AO75445 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
USH2AO75445 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
USH2AO75445 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
USH2AO75445 HES6-204ENST00000409182 863 ntTSL 2 BASIC11.76□□□□□ -0.53
USH2AO75445 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
USH2AO75445 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
USH2AO75445 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC11.76□□□□□ -0.53
USH2AO75445 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
USH2AO75445 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
USH2AO75445 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC11.75□□□□□ -0.53
USH2AO75445 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC11.75□□□□□ -0.53
USH2AO75445 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
USH2AO75445 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
USH2AO75445 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC11.75□□□□□ -0.53
USH2AO75445 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
USH2AO75445 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC11.74□□□□□ -0.53
USH2AO75445 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
USH2AO75445 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
USH2AO75445 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
USH2AO75445 AL592293.1-201ENST00000502889 1188 ntBASIC11.74□□□□□ -0.53
USH2AO75445 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
USH2AO75445 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
USH2AO75445 GUSBP5-201ENST00000418136 578 ntBASIC11.73□□□□□ -0.53
USH2AO75445 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
USH2AO75445 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
USH2AO75445 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC11.73□□□□□ -0.53
USH2AO75445 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
USH2AO75445 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
USH2AO75445 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
USH2AO75445 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC11.73□□□□□ -0.53
USH2AO75445 AC092666.2-201ENST00000613287 246 ntBASIC11.73□□□□□ -0.53
USH2AO75445 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
USH2AO75445 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
USH2AO75445 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC11.72□□□□□ -0.53
USH2AO75445 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC11.72□□□□□ -0.53
USH2AO75445 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
USH2AO75445 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
USH2AO75445 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
USH2AO75445 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
USH2AO75445 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
USH2AO75445 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
USH2AO75445 CHST11-203ENST00000547956 936 ntTSL 2 BASIC11.72□□□□□ -0.53
USH2AO75445 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
USH2AO75445 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
USH2AO75445 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
USH2AO75445 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
USH2AO75445 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
USH2AO75445 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
USH2AO75445 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms