Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV39A0A0B4J263 AP004833.2-201ENST00000532228 1454 ntBASIC21.4■■□□□ 1.02
TRAV39A0A0B4J263 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV39A0A0B4J263 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.4■■□□□ 1.02
TRAV39A0A0B4J263 MIR6090-201ENST00000622481 60 ntBASIC21.4■■□□□ 1.02
TRAV39A0A0B4J263 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV39A0A0B4J263 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV39A0A0B4J263 AC100797.4-201ENST00000631653 1827 ntBASIC21.39■■□□□ 1.02
TRAV39A0A0B4J263 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV39A0A0B4J263 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV39A0A0B4J263 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAV39A0A0B4J263 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV39A0A0B4J263 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV39A0A0B4J263 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.37■■□□□ 1.01
TRAV39A0A0B4J263 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV39A0A0B4J263 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
TRAV39A0A0B4J263 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.37■■□□□ 1.01
TRAV39A0A0B4J263 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.37■■□□□ 1.01
TRAV39A0A0B4J263 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV39A0A0B4J263 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV39A0A0B4J263 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV39A0A0B4J263 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRAV39A0A0B4J263 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.35■■□□□ 1.01
TRAV39A0A0B4J263 MIR3665-201ENST00000578708 105 ntBASIC21.35■■□□□ 1.01
TRAV39A0A0B4J263 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.35■■□□□ 1.01
TRAV39A0A0B4J263 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV39A0A0B4J263 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV39A0A0B4J263 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV39A0A0B4J263 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.34■■□□□ 1.01
TRAV39A0A0B4J263 AC108673.1-201ENST00000510422 1159 ntBASIC21.34■■□□□ 1.01
TRAV39A0A0B4J263 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.34■■□□□ 1.01
TRAV39A0A0B4J263 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
TRAV39A0A0B4J263 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
TRAV39A0A0B4J263 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV39A0A0B4J263 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV39A0A0B4J263 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV39A0A0B4J263 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.32■■□□□ 1
TRAV39A0A0B4J263 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.32■■□□□ 1
TRAV39A0A0B4J263 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV39A0A0B4J263 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV39A0A0B4J263 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV39A0A0B4J263 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV39A0A0B4J263 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TRAV39A0A0B4J263 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV39A0A0B4J263 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV39A0A0B4J263 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV39A0A0B4J263 AL162393.1-201ENST00000437852 946 ntBASIC21.29■■□□□ 1
TRAV39A0A0B4J263 AP006261.1-201ENST00000584783 668 ntBASIC21.29■■□□□ 1
TRAV39A0A0B4J263 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV39A0A0B4J263 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV39A0A0B4J263 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.28■■□□□ 1
TRAV39A0A0B4J263 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
TRAV39A0A0B4J263 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
TRAV39A0A0B4J263 AC087741.3-201ENST00000624270 1347 ntBASIC21.27■□□□□ 0.99
TRAV39A0A0B4J263 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAV39A0A0B4J263 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV39A0A0B4J263 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TRAV39A0A0B4J263 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAV39A0A0B4J263 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV39A0A0B4J263 WHAMMP2-203ENST00000563942 1603 ntBASIC21.26■□□□□ 0.99
TRAV39A0A0B4J263 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV39A0A0B4J263 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV39A0A0B4J263 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.25■□□□□ 0.99
TRAV39A0A0B4J263 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TRAV39A0A0B4J263 AC135983.2-203ENST00000454486 1613 ntBASIC21.25■□□□□ 0.99
TRAV39A0A0B4J263 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.24■□□□□ 0.99
TRAV39A0A0B4J263 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.24■□□□□ 0.99
TRAV39A0A0B4J263 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.24■□□□□ 0.99
TRAV39A0A0B4J263 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.24■□□□□ 0.99
TRAV39A0A0B4J263 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV39A0A0B4J263 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAV39A0A0B4J263 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
TRAV39A0A0B4J263 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAV39A0A0B4J263 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.23■□□□□ 0.99
TRAV39A0A0B4J263 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.22■□□□□ 0.99
TRAV39A0A0B4J263 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV39A0A0B4J263 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV39A0A0B4J263 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV39A0A0B4J263 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV39A0A0B4J263 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV39A0A0B4J263 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV39A0A0B4J263 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.21■□□□□ 0.99
TRAV39A0A0B4J263 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV39A0A0B4J263 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 BX255925.1-201ENST00000566954 1854 ntBASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TRAV39A0A0B4J263 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms